[fink:bugs] #1656 Error installing atlas

"Sylvain Barbot" <[email protected]>
Newsgroups gmane.os.apple.fink.tracker
Message-ID <[email protected]> 


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** [bugs:#1656] Error installing atlas**

**Status:** open
**Group:** 10.9_10.12
**Created:** Fri Feb 24, 2017 05:07 PM UTC by Sylvain Barbot
**Last Updated:** Fri Feb 24, 2017 05:07 PM UTC
**Owner:** nobody


Dear All,

I get errors while compiling and installing the atlas library.

> ink install atlas
(...)
cp -f GEN/* /sw/src/fink.build/atlas-3.10.2-3/darwin_bld/src/blas/level1/.
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make_zaxpy lib
/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -DL2SIZE=4194304
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
-DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
-DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
-DATL_FULL_LAPACK -DATL_NCPU=4 -fPIC -fomit-frame-pointer -O3 -m64
-mfpmath=sse -m64 -fPIC -DDCPLX -o ATL_zaxpy.o -c ATL_zaxpy.c
gcc-fsf-5 -fPIC -fomit-frame-pointer -O3 -m64 -mfpmath=sse -m64 -fPIC
-x assembler-with-cpp -DL2SIZE=4194304
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
-I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
-DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
-DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
-DATL_FULL_LAPACK -DATL_NCPU=4 -DDCPLX -o ATL_zaxpy_xp1yp1aXbX.o -c
ATL_zaxpy_xp1yp1aXbX.c
ATL_zaxpy_xp1yp1aXbX.c:112:no such instruction: `vbroadcastsd 8(%rsi), %ymm1'
ATL_zaxpy_xp1yp1aXbX.c:113:no such instruction: `vbroadcastsd -8(%rsp), %ymm0'
ATL_zaxpy_xp1yp1aXbX.c:114:no such instruction: `vblendpd $0x5,
%ymm0,%ymm1,%ymm1'
ATL_zaxpy_xp1yp1aXbX.c:115:no such instruction: `vbroadcastsd (%rsi), %ymm0'
ATL_zaxpy_xp1yp1aXbX.c:151:no such instruction: `vmovapd (%rdx,%rax), %ymm3'
ATL_zaxpy_xp1yp1aXbX.c:152:no such instruction: `vshufpd $0x5,
%ymm3,%ymm3,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:153:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
ATL_zaxpy_xp1yp1aXbX.c:154:no such instruction: `vaddpd (%rcx,%rax),
%ymm3,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:156:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:157:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:159:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
ATL_zaxpy_xp1yp1aXbX.c:174:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
ATL_zaxpy_xp1yp1aXbX.c:175:no such instruction: `vshufpd $0x5,
%ymm3,%ymm3,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:176:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
ATL_zaxpy_xp1yp1aXbX.c:177:no such instruction: `vaddpd (%rcx,%rax),
%ymm3,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:179:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:180:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:182:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
ATL_zaxpy_xp1yp1aXbX.c:199:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
ATL_zaxpy_xp1yp1aXbX.c:200:no such instruction: `vshufpd $0x5,
%ymm3,%ymm3,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:201:no such instruction: `vmovupd (%rcx,%rax), %ymm2'
ATL_zaxpy_xp1yp1aXbX.c:202:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
ATL_zaxpy_xp1yp1aXbX.c:203:no such instruction: `vaddpd %ymm3, %ymm2,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:205:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
ATL_zaxpy_xp1yp1aXbX.c:206:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
ATL_zaxpy_xp1yp1aXbX.c:208:no such instruction: `vmovupd %ymm2, (%rcx,%rax)'
make[6]: *** [ATL_zaxpy_xp1yp1aXbX.o] Error 1
make[5]: *** [zgen] Error 2
make[4]: *** [zlib] Error 2
make[3]: *** [lib.grd] Error 2
make[2]: *** [IStage1] Error 2
ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
cd /sw/src/fink.build/atlas-3.10.2-3/darwin_bld ;
/Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top error_report
uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -v 2>&1  >>
bin/INSTALL_LOG/ERROR.LOG
Using built-in specs.
COLLECT_GCC=/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc
COLLECT_LTO_WRAPPER=/sw/lib/gcc5/libexec/gcc/x86_64-apple-darwin13.4.0/5.4.0/lto-wrapper
Target: x86_64-apple-darwin13.4.0
Configured with: ../gcc-5.4.0/configure --prefix=/sw
--prefix=/sw/lib/gcc5 --mandir=/sw/share/man
--infodir=/sw/lib/gcc5/info
--enable-languages=c,c++,fortran,lto,objc,obj-c++,java --with-gmp=/sw
--with-libiconv-prefix=/sw --with-isl=/sw --with-mpc=/sw
--with-system-zlib --program-suffix=-fsf-5
Thread model: posix
gcc version 5.4.0 (GCC)
/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -V 2>&1  >>
bin/INSTALL_LOG/ERROR.LOG
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
make[4]: [error_report] Error 1 (ignored)
/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc --version 2>&1  >>
bin/INSTALL_LOG/ERROR.LOG
tar cf error_Corei264AVX.tar Make.inc bin/INSTALL_LOG/*
bzip2 error_Corei264AVX.tar
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory.  Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory
make[1]: *** [build] Error 255
make: *** [build] Error 2
### execution of /tmp/fink.iIQZ6 failed, exit code 2
### execution of /tmp/fink.xspc5 failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.10.2-3
(Reading database ... 192286 files and directories currently installed.)
Removing fink-buildlock-atlas-3.10.2-3 ...
Failed: phase compiling: atlas-3.10.2-3 failed
Before reporting any errors, please run "fink selfupdate" and try again.

If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem.  If not, ask on one (not both, please) of
these mailing lists:

        The Fink Users List <[email protected]>
        The Fink Beginners List <[email protected]>.

Please try to include the complete error message in your report.  This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.

Also include the following system information:
Package manager version: 0.41.1
Distribution version: selfupdate-rsync Thu Feb 23 22:41:48 2017, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.2
Xcode command-line tools: 6.2.0.0.1.1424975374
atlas-3.10.2-3 is set to build with only one job.

I would appreciate tips on how to fix this. Thank you for your feedback.

Sylvain


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