[fink:package-submissions] #5028 update numpy to the 1.13.3 release

Hanspeter, if you are going to suppress the installation of the pyc files during the InstallScript, you really should have added PostInstScript to generate them on package installation and a PreRmScript to delete them on package removal. Please fix that damage to the packaging.


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** [package-submissions:#5028] update numpy to the 1.13.3 release**

**Status:** closed-accepted
**Group:** Added_to_Fink
**Labels:** sci Updated Version of Existing 
**Created:** Sun Oct 01, 2017 05:33 PM UTC by Jack Howarth
**Last Updated:** Wed Nov 08, 2017 02:40 AM UTC
**Owner:** nobody


The following Info file changes update the numpy-py package to the current 1.13.3 upstream release...

~~~
Index: numpy-py.info
===================================================================
RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/sci/numpy-py.info,v
retrieving revision 1.12
diff -u -r1.12 numpy-py.info
--- numpy-py.info	19 Mar 2017 21:49:31 -0000	1.12
+++ numpy-py.info	1 Oct 2017 17:29:06 -0000
@@ -1,6 +1,6 @@
 Info2: <<
 Package: numpy-py%type_pkg[python]
-Version: 1.12.1
+Version: 1.13.3
 Revision: 1
 Maintainer: None <[email protected]>
 Type: python (2.7 3.4 3.5 3.6)
@@ -12,8 +12,9 @@
 	setuptools-tng-py%type_pkg[python]
 <<
 BuildConflicts: atlas
-Source: https://pypi.python.org/packages/a5/16/8a678404411842fe02d780b5f0a676ff4d79cd58f0f22acddab1b392e230/numpy-%v.zip#md5=33e5a84579f31829bbbba084fe0a4300
-Source-MD5: c75b072a984028ac746a6a332c209a91
+BuildAsNobody: false
+Source: https://pypi.python.org/packages/bf/2d/005e45738ab07a26e621c9c12dc97381f372e06678adf7dc3356a69b5960/numpy-%v.zip#md5=300a6f0528122128ac07c6deb5c95917
+Source-MD5: 300a6f0528122128ac07c6deb5c95917
 SourceRename: numpy-%v.zip
 PatchFile: numpy-py.patch
 PatchFile-MD5: 45a158bbad1e117673730d2101e3fdf4
~~~

Note that the 1.13.x series has totally rewritten the configuration tests which now are incompatible with building under fink-bld...

~~~
Could not locate executable pgfortran
don't know how to compile Fortran code on platform 'posix'
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/sw/include/python2.7 -c'
gcc: _configtest.c

failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
  File "setup.py", line 392, in <module>
    setup_package()
  File "setup.py", line 384, in setup_package
    setup(**metadata)
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/core.py", line 169, in setup
    return old_setup(**new_attr)
  File "/sw/lib/python2.7/distutils/core.py", line 151, in setup
    dist.run_commands()
  File "/sw/lib/python2.7/distutils/dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "/sw/lib/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/command/build.py", line 47, in run
    old_build.run(self)
  File "/sw/lib/python2.7/distutils/command/build.py", line 127, in run
    self.run_command(cmd_name)
  File "/sw/lib/python2.7/distutils/cmd.py", line 326, in run_command
    self.distribution.run_command(command)
  File "/sw/lib/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/command/build_src.py", line 148, in run
    self.build_sources()
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/command/build_src.py", line 159, in build_sources
    self.build_library_sources(*libname_info)
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/command/build_src.py", line 294, in build_library_sources
    sources = self.generate_sources(sources, (lib_name, build_info))
  File "/sw/src/fink.build/numpy-py27-1.13.3-1/numpy-1.13.3/numpy/distutils/command/build_src.py", line 377, in generate_sources
    source = func(extension, build_dir)
  File "numpy/core/setup.py", line 674, in get_mathlib_info
    raise RuntimeError("Broken toolchain: cannot link a simple C program")
RuntimeError: Broken toolchain: cannot link a simple C program
~~~

Tested on 10.13 with 'fink -m' for the 2.7, 3.5 and 3.6 python variants.


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