git: 27db1c79bc18 - main - science/py-pubchempy: Remove duplicate
Yuri Victorovich <[email protected]> Wed, 05 Aug 2026 16:29:00 +0000
| Newsgroups | gmane.os.freebsd.devel.cvs.ports |
|---|---|
| Message-ID | <[email protected]> |
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=27db1c79bc18939854a34d02af772a52e6a34fe8 commit 27db1c79bc18939854a34d02af772a52e6a34fe8 Author: Yuri Victorovich <[email protected]> AuthorDate: 2026-08-05 16:26:42 +0000 Commit: Yuri Victorovich <[email protected]> CommitDate: 2026-08-05 16:28:45 +0000 science/py-pubchempy: Remove duplicate PR: 297289 Reported by: Matthew Wener <[email protected]> --- MOVED | 1 + science/Makefile | 1 - science/py-emmet-core/Makefile | 3 ++- science/py-pubchempy/Makefile | 24 ----------------- science/py-pubchempy/distinfo | 3 --- science/py-pubchempy/files/patch-pyproject.toml | 35 ------------------------- science/py-pubchempy/pkg-descr | 4 --- 7 files changed, 3 insertions(+), 68 deletions(-) diff --git a/MOVED b/MOVED index 5c9c8d7fb4cf..c70cd9ad2426 100644 --- a/MOVED +++ b/MOVED @@ -5549,3 +5549,4 @@ x11-fonts/nerd-fonts-d2coding|x11-fonts/nerd-fonts-d2koding|2026-08-03|Renamed b math/topaz||2026-08-04|Has expired: Last release was in 2011 and WWW is unavailable graphics/vv||2026-08-04|Has expired: depends on expired science/InsightToolkit501 science/InsightToolkit501|science/InsightToolkit|2026-08-04|Has expired: Fails to build, error: no template named 'binary_function' in namespace 'std' +science/py-pubchempy|science/py-PubChemPy|2026-08-05|Remove duplicate port diff --git a/science/Makefile b/science/Makefile index dbf2e0bf93bf..232a56b57b17 100644 --- a/science/Makefile +++ b/science/Makefile @@ -414,7 +414,6 @@ SUBDIR += py-plumed SUBDIR += py-pnetcdf SUBDIR += py-probeinterface - SUBDIR += py-pubchempy SUBDIR += py-pupynere SUBDIR += py-py3Dmol SUBDIR += py-pyaixi diff --git a/science/py-emmet-core/Makefile b/science/py-emmet-core/Makefile index 55807771e8cf..536d198df273 100644 --- a/science/py-emmet-core/Makefile +++ b/science/py-emmet-core/Makefile @@ -1,5 +1,6 @@ PORTNAME= emmet-core DISTVERSION= 0.87.1 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -14,7 +15,7 @@ LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=63.1.0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=8:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pubchempy>0:science/py-pubchempy@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}PubChemPy>0:science/py-PubChemPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}blake3>0:security/py-blake3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}inflect>=7.5.0:devel/py-inflect@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}monty>=2024.2.2:devel/py-monty@${PY_FLAVOR} \ diff --git a/science/py-pubchempy/Makefile b/science/py-pubchempy/Makefile deleted file mode 100644 index ba9aa414b5d0..000000000000 --- a/science/py-pubchempy/Makefile +++ /dev/null @@ -1,24 +0,0 @@ -PORTNAME= pubchempy -DISTVERSION= 1.0.5 -CATEGORIES= science python -MASTER_SITES= PYPI -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} - -MAINTAINER= [email protected] -COMMENT= Python wrapper for the PubChem PUG REST API -WWW= https://github.com/mcs07/PubChemPy - -LICENSE= MIT - -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=61.0:devel/py-setuptools@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} - -USES= python:3.10+ -USE_PYTHON= autoplist pep517 - -NO_ARCH= yes - -# tests as of 1.0.5: not enabled because every upstream test queries the live -# PubChem REST API, which is unavailable in the clean poudriere test environment. - -.include <bsd.port.mk> diff --git a/science/py-pubchempy/distinfo b/science/py-pubchempy/distinfo deleted file mode 100644 index 8775f06a5579..000000000000 --- a/science/py-pubchempy/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -TIMESTAMP = 1785523733 -SHA256 (pubchempy-1.0.5.tar.gz) = 08f0b2a82a5caa5d61e14935d655da554602d7b5686fe661ab584c882ffff623 -SIZE (pubchempy-1.0.5.tar.gz) = 26814 diff --git a/science/py-pubchempy/files/patch-pyproject.toml b/science/py-pubchempy/files/patch-pyproject.toml deleted file mode 100644 index 43c22d5a722d..000000000000 --- a/science/py-pubchempy/files/patch-pyproject.toml +++ /dev/null @@ -1,35 +0,0 @@ --- Normalize the project name to lowercase and fix invalid PEP 621 license --- declaration. Upstream places license-files under [project], which is not --- allowed by PEP 621, and uses license = "MIT" instead of the PEP 621 text --- form. Newer setuptools rejects the resulting [project] table. Lowercasing --- the name also makes the produced wheel match the filename the ports --- PEP 517 installer expects. --- The setuptools requirement is lowered to the version available in ports. ---- pyproject.toml.orig -+++ pyproject.toml -@@ -1,11 +1,10 @@ - [project] --name = "PubChemPy" -+name = "pubchempy" - version = "1.0.5" - description = "A simple Python wrapper around the PubChem PUG REST API." - readme = "README.md" - authors = [{ name = "Matt Swain", email = "[email protected]" }] --license = "MIT" --license-files = ["LICENSE"] -+license = {text = "MIT"} - requires-python = ">=3.10" - dependencies = [] - keywords = ["pubchem", "python", "rest", "api", "chemistry", "cheminformatics"] -@@ -54,9 +53,10 @@ - - [tool.setuptools] - py-modules = ["pubchempy"] -+license-files = ["LICENSE"] - - [build-system] --requires = ["setuptools>=77.0.3"] -+requires = ["setuptools>=61.0"] - build-backend = "setuptools.build_meta" - - [tool.pytest.ini_options] diff --git a/science/py-pubchempy/pkg-descr b/science/py-pubchempy/pkg-descr deleted file mode 100644 index 4b8673135e00..000000000000 --- a/science/py-pubchempy/pkg-descr +++ /dev/null @@ -1,4 +0,0 @@ -PubChemPy provides a way to interact with PubChem in Python. It allows -chemical searches by name, substructure and similarity, chemical -standardization, conversion between chemical file formats, depiction -and retrieval of chemical properties.