git: dfed00c2382c - main - science/py-scikit-sparse: update 0.4.16 → 0.5.0
Yuri Victorovich <[email protected]> Thu, 06 Aug 2026 02:19:04 +0000
| Newsgroups | gmane.os.freebsd.devel.cvs.ports |
|---|---|
| Message-ID | <6a73ef18.3bdde.38b251c3__34487.1721624926$1785982988$gmane$org@gitrepo.freebsd.org> |
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=dfed00c2382c9c409cb4d96bd3ccef4790d2a1c6 commit dfed00c2382c9c409cb4d96bd3ccef4790d2a1c6 Author: Yuri Victorovich <[email protected]> AuthorDate: 2026-08-06 01:13:20 +0000 Commit: Yuri Victorovich <[email protected]> CommitDate: 2026-08-06 02:18:50 +0000 science/py-scikit-sparse: update 0.4.16 → 0.5.0 --- science/py-scikit-sparse/Makefile | 36 ++++++++++++++-------- science/py-scikit-sparse/distinfo | 6 ++-- .../py-scikit-sparse/files/patch-pyproject.toml | 15 +++++++++ science/py-scikit-sparse/pkg-descr | 5 +++ 4 files changed, 46 insertions(+), 16 deletions(-) diff --git a/science/py-scikit-sparse/Makefile b/science/py-scikit-sparse/Makefile index f94fc8d00c72..07255a9899f6 100644 --- a/science/py-scikit-sparse/Makefile +++ b/science/py-scikit-sparse/Makefile @@ -1,7 +1,6 @@ PORTNAME= scikit-sparse DISTVERSIONPREFIX= v -DISTVERSION= 0.4.16 -PORTREVISION= 4 +DISTVERSION= 0.5.0 CATEGORIES= science python #MASTER_SITES= PYPI # missing files under tests/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -13,25 +12,36 @@ WWW= https://github.com/scikit-sparse/scikit-sparse LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${RUN_DEPENDS} -LIB_DEPENDS= libumfpack.so:math/suitesparse-umfpack \ - libcholmod.so:math/suitesparse-cholmod -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=2.0:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +LIB_DEPENDS= libamd.so:math/suitesparse-amd \ + libbtf.so:math/suitesparse-btf \ + libcamd.so:math/suitesparse-camd \ + libccolamd.so:math/suitesparse-ccolamd \ + libcholmod.so:math/suitesparse-cholmod \ + libcolamd.so:math/suitesparse-colamd \ + libklu.so:math/suitesparse-klu \ + libspqr.so:math/suitesparse-spqr \ + libumfpack.so:math/suitesparse-umfpack +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>2.0:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=1.14:science/py-scipy@${PY_FLAVOR} USES= fortran python -USE_PYTHON= distutils cython autoplist pytest +USE_PYTHON= pep517 cython autoplist pytest USE_GITHUB= yes -CFLAGS+= -I${LOCALBASE}/include/suitesparse -LDFLAGS+= -shared +MAKE_ENV= SUITESPARSE_INCLUDE_DIR=${LOCALBASE}/include/suitesparse \ + SUITESPARSE_LIBRARY_DIR=${LOCALBASE}/lib TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -TEST_WRKSRC= ${WRKSRC}/tests +TEST_WRKSRC= ${WRKSRC} +TEST_ARGS= -p no:cov -p no:xdist post-install: - @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/sksparse/cholmod*.so + @${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/sksparse -name "*.so" | ${XARGS} ${STRIP_CMD} -# tests as of 0.4.16: 10 passed, 400 warnings in 27.47 +# tests as of 0.5.0: 9285 passed, 3 xfailed in 24.82s .include <bsd.port.mk> diff --git a/science/py-scikit-sparse/distinfo b/science/py-scikit-sparse/distinfo index 2278af1b41e1..30d24af84f03 100644 --- a/science/py-scikit-sparse/distinfo +++ b/science/py-scikit-sparse/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1761722287 -SHA256 (scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz) = be75af5e8a9ff4bb947c2de02936d26b7727b1f92aa74fbd6cdb57414946e82f -SIZE (scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz) = 414706 +TIMESTAMP = 1785916036 +SHA256 (scikit-sparse-scikit-sparse-v0.5.0_GH0.tar.gz) = 2f98b2c7d089a65d3eaa7533393966b9e695a429509cf0c4f5d9bca05a3f8687 +SIZE (scikit-sparse-scikit-sparse-v0.5.0_GH0.tar.gz) = 3475986 diff --git a/science/py-scikit-sparse/files/patch-pyproject.toml b/science/py-scikit-sparse/files/patch-pyproject.toml new file mode 100644 index 000000000000..cad30b51313d --- /dev/null +++ b/science/py-scikit-sparse/files/patch-pyproject.toml @@ -0,0 +1,15 @@ +-- Use the setuptools version available in FreeBSD ports and the legacy +-- license form supported by older setuptools. + +--- pyproject.toml.orig 2026-08-05 07:48:05 UTC ++++ pyproject.toml +@@ -9,8 +9,7 @@ requires-python = ">=3.10" + description = "Scikit-sparse is a Python wrapper for the SuiteSparse sparse matrix library." + readme = "README.rst" + requires-python = ">=3.10" +-license = "BSD-2-Clause" +-license-files = ["LICENSE.txt"] ++license = {text = "BSD-2-Clause"} + + authors = [ + { name = "David Cournapeau", email = "[email protected]" }, diff --git a/science/py-scikit-sparse/pkg-descr b/science/py-scikit-sparse/pkg-descr index 79eda251457e..2c2042a6617f 100644 --- a/science/py-scikit-sparse/pkg-descr +++ b/science/py-scikit-sparse/pkg-descr @@ -1 +1,6 @@ scikits-sparse is a Python module for sparse matrix calculations. + +The scikit-sparse package is a companion to the scipy.sparse package for sparse +matrix manipulation in Python. It provides routines that are not suitable for +inclusion in scipy.sparse proper, typically because they depend on external +libraries with GPL licenses, such as SuiteSparse.