git: 80cc84dfb3c8 - main - science/py-PyNE: update 0.7.8 → 0.7.8.226

Yuri Victorovich <[email protected]>
Newsgroups gmane.os.freebsd.devel.cvs.ports
Message-ID <6a756893.2797d.760e7b17__34011.3021245756$1786079500$gmane$org@gitrepo.freebsd.org> 
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=80cc84dfb3c8702553b9854c73d75b2cc77e8a1f

commit 80cc84dfb3c8702553b9854c73d75b2cc77e8a1f
Author:     Yuri Victorovich <[email protected]>
AuthorDate: 2026-08-07 05:09:17 +0000
Commit:     Yuri Victorovich <[email protected]>
CommitDate: 2026-08-07 05:09:30 +0000

    science/py-PyNE: update 0.7.8 → 0.7.8.226
---
 science/py-PyNE/Makefile                   | 21 ++++++++++++---------
 science/py-PyNE/distinfo                   | 26 +++++++++++++-------------
 science/py-PyNE/files/patch-CMakeLists.txt | 18 ++++++++++++++++++
 science/py-PyNE/pkg-plist                  | 15 ++++++++-------
 4 files changed, 51 insertions(+), 29 deletions(-)

diff --git a/science/py-PyNE/Makefile b/science/py-PyNE/Makefile
index fac61e03440c..19a16136e32d 100644
--- a/science/py-PyNE/Makefile
+++ b/science/py-PyNE/Makefile
@@ -1,6 +1,6 @@
-PORTNAME=	PyNE
-DISTVERSION=	0.7.8
-PORTREVISION=	6
+PORTNAME=	PyNE # it currently combines python and C++ libs
+DISTVERSION=	0.7.8-226
+DISTVERSIONSUFFIX=	-g760c695d
 CATEGORIES=	science # physics
 MASTER_SITES=	https://raw.githubusercontent.com/pyne/data/master/:decay \
 		https://raw.githubusercontent.com/pyne/data/master/:cram \
@@ -33,22 +33,26 @@ PY_DEPENDS=	${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR} # the dependency list is only in ubuntu.sh, see https://github.com/pyne/pyne/issues/1518
-PY_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}OpenMC>0:science/py-OpenMC@${PY_FLAVOR}
+PY_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}openmc>0:science/py-OpenMC@${PY_FLAVOR}
 BUILD_DEPENDS=	cmake:devel/cmake-core \
 		${PY_DEPENDS}
 LIB_DEPENDS=	libhdf5.so:science/hdf5 \
-		libMOAB.so:math/moab
+		libMOAB.so:math/moab \
+		libopenblas.so:math/openblas
 RUN_DEPENDS=	${PY_DEPENDS}
 
 USES=		compiler:c++17-lang fortran python
-USE_PYTHON=	distutils cython flavors
+USE_PYTHON=	distutils cython flavors pytest
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	pyne
 GH_PROJECT=	pyne
 
 MAKE_ENV=	DESTDIR=${STAGEDIR}
-TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
+TEST_ENV=	${MAKE_ENV} \
+		PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \
+		LD_LIBRARY_PATH=${STAGEDIR}${LOCALBASE}/lib
+TEST_WRKSRC=	${WRKSRC}/tests
 FFLAGS+=	-fallow-argument-mismatch
 
 # all arguments are described here: http://pyne.io/install/source.html#source
@@ -82,7 +86,6 @@ do-install:
 		${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/*.so \
 		${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/xs/models.so
 
-# CAVEAT: due to the failure to find MOAB-5.5.1 the file pyne/source_sampling.so isn't built, and is removed from plist
-#         - see https://github.com/pyne/pyne/issues/1537
+# tests as of 0.7.8-226: 1 failed, 924 passed, 67 skipped, 29 warnings in 14.96s, see https://github.com/pyne/pyne/issues/1584
 
 .include <bsd.port.mk>
diff --git a/science/py-PyNE/distinfo b/science/py-PyNE/distinfo
index 500e242a84dd..a2cec01021fc 100644
--- a/science/py-PyNE/distinfo
+++ b/science/py-PyNE/distinfo
@@ -1,13 +1,13 @@
-TIMESTAMP = 1705890283
-SHA256 (PyNE-0.7.8/decay.tar.gz) = aa1aa69cb84685731eb234c046c56f9167a0bcc9686ccd5437f62186ac9bd441
-SIZE (PyNE-0.7.8/decay.tar.gz) = 8012492
-SHA256 (PyNE-0.7.8/cram.tar.gz) = 5ea1443226234787e0b8ef7f1d4c9cb0a6846b9da00bc843557051ad74e4a2f5
-SIZE (PyNE-0.7.8/cram.tar.gz) = 2110526
-SHA256 (PyNE-0.7.8/decay-linux-clang.tar.gz) = 6fa05231e7fbfe5994e9a6705131bdcac2fc5845e362d3607e96c46ed418a0db
-SIZE (PyNE-0.7.8/decay-linux-clang.tar.gz) = 18904467
-SHA256 (PyNE-0.7.8/cram-linux-clang.tar.gz) = 0a7a04b5268db91fea7bec75dbefe3ec23036f9e250aacc6fb353d17d8e84538
-SIZE (PyNE-0.7.8/cram-linux-clang.tar.gz) = 20477898
-SHA256 (PyNE-0.7.8/prebuilt_nuc_data.h5) = 77a8fbda6db3ed154766f4a7c134651ba710f52d35304f0e456dc6f7e7a69936
-SIZE (PyNE-0.7.8/prebuilt_nuc_data.h5) = 13021601
-SHA256 (PyNE-0.7.8/pyne-pyne-0.7.8_GH0.tar.gz) = 91b5052fb409ff54d1cd2a40476feed112e2d75bf150eef6454b83400dacd25e
-SIZE (PyNE-0.7.8/pyne-pyne-0.7.8_GH0.tar.gz) = 9381089
+TIMESTAMP = 1786077761
+SHA256 (PyNE-0.7.8.226/decay.tar.gz) = aa1aa69cb84685731eb234c046c56f9167a0bcc9686ccd5437f62186ac9bd441
+SIZE (PyNE-0.7.8.226/decay.tar.gz) = 8012492
+SHA256 (PyNE-0.7.8.226/cram.tar.gz) = 5ea1443226234787e0b8ef7f1d4c9cb0a6846b9da00bc843557051ad74e4a2f5
+SIZE (PyNE-0.7.8.226/cram.tar.gz) = 2110526
+SHA256 (PyNE-0.7.8.226/decay-linux-clang.tar.gz) = 6fa05231e7fbfe5994e9a6705131bdcac2fc5845e362d3607e96c46ed418a0db
+SIZE (PyNE-0.7.8.226/decay-linux-clang.tar.gz) = 18904467
+SHA256 (PyNE-0.7.8.226/cram-linux-clang.tar.gz) = 0a7a04b5268db91fea7bec75dbefe3ec23036f9e250aacc6fb353d17d8e84538
+SIZE (PyNE-0.7.8.226/cram-linux-clang.tar.gz) = 20477898
+SHA256 (PyNE-0.7.8.226/prebuilt_nuc_data.h5) = 77a8fbda6db3ed154766f4a7c134651ba710f52d35304f0e456dc6f7e7a69936
+SIZE (PyNE-0.7.8.226/prebuilt_nuc_data.h5) = 13021601
+SHA256 (PyNE-0.7.8.226/pyne-pyne-0.7.8-226-g760c695d_GH0.tar.gz) = 14f6eca2e8d40fb2134c201c3d417a61733aee849e50bd47b90855e1dfcb09f9
+SIZE (PyNE-0.7.8.226/pyne-pyne-0.7.8-226-g760c695d_GH0.tar.gz) = 9139636
diff --git a/science/py-PyNE/files/patch-CMakeLists.txt b/science/py-PyNE/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..907a55b4c9c1
--- /dev/null
+++ b/science/py-PyNE/files/patch-CMakeLists.txt
@@ -0,0 +1,18 @@
+--- CMakeLists.txt.orig	2026-08-07 04:43:33 UTC
++++ CMakeLists.txt
+@@ -12,7 +12,14 @@ project(pyne)
+ project(pyne)
+ 
+ # Get the version from Git
+-include(GetVersionFromGit)
++#include(GetVersionFromGit)
++set(PYNE_VERSION_MAJOR "0")
++set(PYNE_VERSION_MINOR "7")
++set(PYNE_VERSION_PATCH "8")
++set(PYNE_VERSION "${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH}")
++set(PYNE_COMMIT_HASH "760c695d")
++set(PYNE_DEV_STATE "1")
++set(PYNE_COMMIT_COUNT "226")
+ 
+ # Output version information
+ message(STATUS "PyNE version: ${PYNE_VERSION}")
diff --git a/science/py-PyNE/pkg-plist b/science/py-PyNE/pkg-plist
index 9cd1ff49c348..277a1b68a929 100644
--- a/science/py-PyNE/pkg-plist
+++ b/science/py-PyNE/pkg-plist
@@ -1,6 +1,7 @@
 bin/aceviewer
 bin/activation_responses.py
 bin/expand_tags.py
+bin/generate_statepoint.py
 bin/gtcadis.py
 bin/meshtal_to_mesh
 bin/nuc_data_make
@@ -30,7 +31,6 @@ include/pyne/measure.h
 include/pyne/nucname.h
 include/pyne/particle.h
 include/pyne/pyne.h
-include/pyne/pyne_version.h
 include/pyne/rxname.h
 include/pyne/source.h
 include/pyne/source_sampling.h
@@ -38,10 +38,10 @@ include/pyne/tally.h
 include/pyne/transmuters.h
 include/pyne/utils.h
 lib/libpyne.so
-%%PYTHON_SITELIBDIR%%/pyne-0.7.8-py%%PYTHON_VER%%.egg-info/PKG-INFO
-%%PYTHON_SITELIBDIR%%/pyne-0.7.8-py%%PYTHON_VER%%.egg-info/SOURCES.txt
-%%PYTHON_SITELIBDIR%%/pyne-0.7.8-py%%PYTHON_VER%%.egg-info/dependency_links.txt
-%%PYTHON_SITELIBDIR%%/pyne-0.7.8-py%%PYTHON_VER%%.egg-info/top_level.txt
+%%PYTHON_SITELIBDIR%%/pyne-0.7.8.dev0-py%%PYTHON_VER%%.egg-info/PKG-INFO
+%%PYTHON_SITELIBDIR%%/pyne-0.7.8.dev0-py%%PYTHON_VER%%.egg-info/SOURCES.txt
+%%PYTHON_SITELIBDIR%%/pyne-0.7.8.dev0-py%%PYTHON_VER%%.egg-info/dependency_links.txt
+%%PYTHON_SITELIBDIR%%/pyne-0.7.8.dev0-py%%PYTHON_VER%%.egg-info/top_level.txt
 %%PYTHON_SITELIBDIR%%/pyne/__init__.pxd
 %%PYTHON_SITELIBDIR%%/pyne/__init__.py
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/__init__%%PYTHON_TAG%%.pyc
@@ -50,6 +50,7 @@ lib/libpyne.so
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/api%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/binaryreader%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/cccc%%PYTHON_TAG%%.pyc
+%%PYTHON_SITELIBDIR%%/pyne/__pycache__/dagmc%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/decay_tape9%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/endl%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/ensdf%%PYTHON_TAG%%.pyc
@@ -64,7 +65,6 @@ lib/libpyne.so
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/origen22%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/partisn%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/ptrac_to_hdf5%%PYTHON_TAG%%.pyc
-%%PYTHON_SITELIBDIR%%/pyne/__pycache__/pyne_version%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/r2s%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/rxdata%%PYTHON_TAG%%.pyc
 %%PYTHON_SITELIBDIR%%/pyne/__pycache__/serpent%%PYTHON_TAG%%.pyc
@@ -109,6 +109,7 @@ lib/libpyne.so
 %%PYTHON_SITELIBDIR%%/pyne/cpp_transmuters.pxd
 %%PYTHON_SITELIBDIR%%/pyne/cpp_utils.pxd
 %%PYTHON_SITELIBDIR%%/pyne/cram.so
+%%PYTHON_SITELIBDIR%%/pyne/dagmc.py
 %%PYTHON_SITELIBDIR%%/pyne/data.pxd
 %%PYTHON_SITELIBDIR%%/pyne/data.so
 %%PYTHON_SITELIBDIR%%/pyne/dbgen/__init__.py
@@ -222,7 +223,6 @@ lib/libpyne.so
 %%PYTHON_SITELIBDIR%%/pyne/ptrac_to_hdf5.py
 %%PYTHON_SITELIBDIR%%/pyne/pyne_config.pxd
 %%PYTHON_SITELIBDIR%%/pyne/pyne_config.so
-%%PYTHON_SITELIBDIR%%/pyne/pyne_version.py
 %%PYTHON_SITELIBDIR%%/pyne/r2s.py
 %%PYTHON_SITELIBDIR%%/pyne/rxdata.py
 %%PYTHON_SITELIBDIR%%/pyne/rxname.pxd
@@ -231,6 +231,7 @@ lib/libpyne.so
 %%PYTHON_SITELIBDIR%%/pyne/source.pxd
 %%PYTHON_SITELIBDIR%%/pyne/source.so
 %%PYTHON_SITELIBDIR%%/pyne/source_sampling.pxd
+%%PYTHON_SITELIBDIR%%/pyne/source_sampling.so
 %%PYTHON_SITELIBDIR%%/pyne/spatialsolver.py
 %%PYTHON_SITELIBDIR%%/pyne/spectanalysis.py
 %%PYTHON_SITELIBDIR%%/pyne/stlcontainers.pxd
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