git: 012848c1445a - main - science/py-gsd: update 3.4.1 → 5.0.1

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=012848c1445ad7ac3d5c9b5c25f7d1f479f6042c

commit 012848c1445ad7ac3d5c9b5c25f7d1f479f6042c
Author:     Yuri Victorovich <[email protected]>
AuthorDate: 2026-08-08 02:54:38 +0000
Commit:     Yuri Victorovich <[email protected]>
CommitDate: 2026-08-08 05:12:49 +0000

    science/py-gsd: update 3.4.1 → 5.0.1
---
 science/py-gsd/Makefile                   | 18 +++++++-----------
 science/py-gsd/distinfo                   |  6 +++---
 science/py-gsd/files/patch-pyproject.toml | 23 +++++++++++++++++++++++
 3 files changed, 33 insertions(+), 14 deletions(-)

diff --git a/science/py-gsd/Makefile b/science/py-gsd/Makefile
index 3b3d2b685433..9f3fdbd0efc8 100644
--- a/science/py-gsd/Makefile
+++ b/science/py-gsd/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	gsd
-DISTVERSION=	3.4.1
-PORTREVISION=	3
+DISTVERSION=	5.0.1
 CATEGORIES=	science python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -12,20 +11,17 @@ WWW=		https://bitbucket.org/glotzer/gsd/wiki/Home
 LICENSE=	BSD2CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
-BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR}
-RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR}
+BUILD_DEPENDS=	${PY_SETUPTOOLS} \
+		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}numpy>=2.0:math/py-numpy@${PY_FLAVOR}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.0:math/py-numpy@${PY_FLAVOR}
 
 USES=		python
-USE_PYTHON=	distutils cython autoplist pytest
+USE_PYTHON=	pep517 cython autoplist pytest
 
 TEST_WRKSRC=	${WRKSRC}/gsd/test
-#TEST_ARGS=	--pyargs gsd -p gsd.pytest_plugin_validate --validate # enable this line to run longer tests, see https://gsd.readthedocs.io/en/v2.6.0/installation.html#run-tests
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 
-post-extract: # force cythonization because pre-cythonized fl.c fails to complile
-	@${RM} ${WRKSRC}/gsd/fl.c
-
-post-install:
-	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/gsd/fl*.so
+# tests as of 5.0.1: 151 passed, 1 warning in 13.30s
 
 .include <bsd.port.mk>
diff --git a/science/py-gsd/distinfo b/science/py-gsd/distinfo
index aabddfe21d9a..5bedb201de2c 100644
--- a/science/py-gsd/distinfo
+++ b/science/py-gsd/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1729667935
-SHA256 (gsd-3.4.1.tar.gz) = 468e513da06bea35efc7013d2341fe2bd2e3fd3be4a9a600f71b4d31e5b2192a
-SIZE (gsd-3.4.1.tar.gz) = 185315
+TIMESTAMP = 1786151937
+SHA256 (gsd-5.0.1.tar.gz) = c072d1ee934864d618039f3e7448bc79f31fe1a0f1fabfdb9cd4143a7ab2376b
+SIZE (gsd-5.0.1.tar.gz) = 202182
diff --git a/science/py-gsd/files/patch-pyproject.toml b/science/py-gsd/files/patch-pyproject.toml
new file mode 100644
index 000000000000..e6aa05f7f654
--- /dev/null
+++ b/science/py-gsd/files/patch-pyproject.toml
@@ -0,0 +1,23 @@
+Fix license field format and lower setuptools requirement
+
+--- pyproject.toml.orig2026-08-07 19:14:13 UTC
++++ pyproject.toml
+@@ -4,8 +4,7 @@ name = "gsd"
+ version = "5.0.1"
+ description = "General simulation data file format."
+ readme = "README.md"
+-license = "BSD-2-Clause"
+-license-files = ["LICENSE"]
++license = {text = "BSD-2-Clause"}
+ authors = [
+     {name = "Joshua A. Anderson", email = "[email protected]"},
+ ]
+@@ -31,7 +30,7 @@ packages = ["gsd", "gsd.test"]
+ packages = ["gsd", "gsd.test"]
+ 
+ [build-system]
+-requires = ["setuptools>=77.0.0",
++requires = ["setuptools>=63.1.0",
+             "wheel",
+             "Cython>=3.1",
+             "numpy>=2.0.0"]