git: 20c0c419cc52 - main - devel/py-anndata: Update to 0.13.2
Po-Chuan Hsieh <[email protected]>
| Newsgroups | gmane.os.freebsd.devel.cvs.ports |
|---|---|
| Message-ID | <6a85a877.1d2e2.16c7951d__23919.3320319586$1787144533$gmane$org@gitrepo.freebsd.org> |
The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=20c0c419cc52d6a870f16ccb5d327455bc7fce1d commit 20c0c419cc52d6a870f16ccb5d327455bc7fce1d Author: Po-Chuan Hsieh <[email protected]> AuthorDate: 2026-08-19 12:25:13 +0000 Commit: Po-Chuan Hsieh <[email protected]> CommitDate: 2026-08-19 12:55:28 +0000 devel/py-anndata: Update to 0.13.2 - Update version requirement of RUN_DEPENDS Changes: https://github.com/scverse/anndata/releases --- devel/py-anndata/Makefile | 24 +++++++++++++++--------- devel/py-anndata/distinfo | 6 +++--- devel/py-anndata/files/patch-pyproject.toml | 11 ----------- 3 files changed, 18 insertions(+), 23 deletions(-) diff --git a/devel/py-anndata/Makefile b/devel/py-anndata/Makefile index cf27b7cf480b..330e33c4b449 100644 --- a/devel/py-anndata/Makefile +++ b/devel/py-anndata/Makefile @@ -1,5 +1,5 @@ PORTNAME= anndata -PORTVERSION= 0.12.19 +PORTVERSION= 0.13.2 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -15,20 +15,26 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>=0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>=0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}array-api-compat>=1.7.1:devel/py-array-api-compat@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}h5py>=3.8:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}h5py>=3.11:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}legacy-api-wrap>=0:devel/py-legacy-api-wrap@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>=0:devel/py-natsort@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}numpy>=1.26,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=2.1,1:math/py-numpy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=24.2:devel/py-packaging@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pandas>=2.1.0,1<3,1:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=2.3,1<3,1:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pooch>=0:devel/py-pooch@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=1.12:science/py-scipy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scverse-misc>=0.0.3:devel/py-scverse-misc@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}zarr>=2.18.4:devel/py-zarr@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}scipy>=1.14:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scverse-misc>=0.1.0:devel/py-scverse-misc@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}zarr>=3.1:devel/py-zarr@${PY_FLAVOR} -USES= python:3.11+ +USES= python:3.12+ USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes -.include <bsd.port.mk> +.include <bsd.port.pre.mk> + +.if ${PYTHON_REL} < 31400 +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.16:devel/py-typing-extensions@${PY_FLAVOR} +.endif + +.include <bsd.port.post.mk> diff --git a/devel/py-anndata/distinfo b/devel/py-anndata/distinfo index 4b056974dd4e..c0a555f60f3e 100644 --- a/devel/py-anndata/distinfo +++ b/devel/py-anndata/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1783564022 -SHA256 (anndata-0.12.19.tar.gz) = 336ccc88463b56c22969634ca5256c3829af8b087a5a4ecfdac3504fedaa27cc -SIZE (anndata-0.12.19.tar.gz) = 2257928 +TIMESTAMP = 1784005084 +SHA256 (anndata-0.13.2.tar.gz) = f40106369a08204bc89915759113124f12abb19c3d011f7503e627e9ef8f29c9 +SIZE (anndata-0.13.2.tar.gz) = 2283406 diff --git a/devel/py-anndata/files/patch-pyproject.toml b/devel/py-anndata/files/patch-pyproject.toml deleted file mode 100644 index e8dc0050c398..000000000000 --- a/devel/py-anndata/files/patch-pyproject.toml +++ /dev/null @@ -1,11 +0,0 @@ ---- pyproject.toml.orig 2020-02-02 00:00:00 UTC -+++ pyproject.toml -@@ -46,7 +46,7 @@ dependencies = [ - "packaging>=24.2", - "array_api_compat>=1.7.1", - "legacy-api-wrap", -- "zarr >=2.18.7, !=3.0.*", -+ "zarr >=2.18.4, !=3.0.*", - "scverse-misc>=0.0.3", - ] - dynamic = [ "version" ]