Installing SGE problem
Co Thai Ngo <[email protected]> Tue, 7 Sep 2004 16:36:42 -0600
| Newsgroups | gmane.os.netbsd.devel.cluster |
|---|---|
| Message-ID | <[email protected]> |
Hi, I've got the following problem while trying installing SGE package. Any help to resolve it is hight appreciated. ******************** .... __________Q_M_O_N____________ gcc -c -O -Wall -DNETBSD -DNETBSD_I386 -DSECURE -I/home/cngo/pkg/include -DENABLE_438_FIX -I/usr/X11R6/include -DCOMPILE_DC -D__SGE_NO_USERMAPPING__ -I../Xmt310 -Wno-strict-prototypes -Wno-error -DHAVE_MEMMOVE -DXMT_HAS_STRERROR -I../3rdparty/qmon/Xmt310 -I../3rdparty/qmon/Xbae -I../3rdparty/qmon/iconlist -I../3rdparty/qmon/ltree -I../3rdparty/qmon/outline -I../3rdparty/qmon/rowcol -I../3rdparty/qmon/spinbox -I../clients/qmon -I../3rdparty/qmon/tab -I/usr/X11R6/include ../Xmt310/Xmt/All.c In file included from ../Xmt310/Xmt/All.c:23: ../Xmt310/Xmt/Xmt.h:56: Xm/Xm.h: No such file or directory In file included from ../Xmt310/Xmt/All.c:27: ../Xmt310/Xmt/Layout.h:24: Xm/BulletinB.h: No such file or directory gmake: *** [All.o] Error 1 not done *** Error code 1 Stop. make: stopped in /home/cngo/cvs/NetBSD/pkgsrc/parallel/sge *** Error code 1 ..... ************* Quoting Ron Chen <[email protected]>: > SGE support for NetBSD was checked into the project > cvs for a long time, you just need to get the SGE 5.3 > branch source tree from the SGE project site cvs. > > -Ron > > --- MLH <[email protected]> wrote: > > > Hi, > > > > > > Do you use Sun Grid Engine ? How does it work ? > > I've checked your website but I > > > don't see any information about how SGE. > > > > > > > for linkage analysis. We are running an > > SGE-enabled version of > > > > SOLAR that manages all compute tasks. Currently > > the cluster is > > > > composed of MP Athlons and a few experimental > > Opteron boxes running > > > > solaris86. > > > > We use GridEngine on Solaris/Solaris86. The cluster > > is all running > > Solaris86 right now. I had a local student working > > to port SGE to > > NetBSD for me last year. Several people were > > apparently working on > > it at the same time and it came together, but I've > > been too busy > > to do much with a NetBSD cluster right now. > > > > SGE is essentially integrated into the front-end of > > our software. > > All of tour software can run without SGE. It just > > make things easier > > to work iwth a cluster. There is a custom version > > of SOLAR that > > embeds the SGE control mechanisms to launch and > > manage the tasks > > and we have many other scripts which use SGE to > > manage custom > > operations. We haven't implemented any smp-type > > code. It's just > > typical task-oriented code that we throw at a bunch > > of processors > > at the same time. Much of what we do can be broken > > down for analysis > > by marker, chromosome, trait, or individual etc. so > > it's easier to > > arrange to have several hundred cpus each run one > > fairly linear > > task at a time and report back when done. Not > > terribly fancy, but > > quite effective. > > > > If you are interested, I can likely put you touch > > with a couple of > > people who develop the SGE management facilities. > > > > > > > > > > __________________________________ > Do you Yahoo!? > New and Improved Yahoo! Mail - 100MB free storage! > http://promotions.yahoo.com/new_mail > -- Co Thai Ngo Dept. of Biology New Mexico State University