Re: Installing SGE problem

Do you have Motif installed on the machine?

Also, you can skip compiling qmon with the aimk switch
"-no-qmon".

 -Ron

--- Co Thai Ngo <[email protected]> wrote:
> Hi, 
>  
> I've got the following problem while trying
> installing SGE package. Any help to 
> resolve it is highly appreciated.  
>  
> ******************** 
>  
> .... 
>  
> __________Q_M_O_N____________ 
> gcc -c -O -Wall -DNETBSD -DNETBSD_I386  -DSECURE
> -I/home/cngo/pkg/include   
> -DENABLE_438_FIX -I/usr/X11R6/include -DCOMPILE_DC
> -D__SGE_NO_USERMAPPING__ 
> -I../Xmt310 -Wno-strict-prototypes -Wno-error 
> -DHAVE_MEMMOVE 
> -DXMT_HAS_STRERROR -I../3rdparty/qmon/Xmt310
> -I../3rdparty/qmon/Xbae 
> -I../3rdparty/qmon/iconlist -I../3rdparty/qmon/ltree
> -I../3rdparty/qmon/outline 
> -I../3rdparty/qmon/rowcol -I../3rdparty/qmon/spinbox
> -I../clients/qmon 
> -I../3rdparty/qmon/tab -I/usr/X11R6/include 
> ../Xmt310/Xmt/All.c 
> In file included from ../Xmt310/Xmt/All.c:23: 
> ../Xmt310/Xmt/Xmt.h:56: Xm/Xm.h: No such file or
> directory 
> In file included from ../Xmt310/Xmt/All.c:27: 
> ../Xmt310/Xmt/Layout.h:24: Xm/BulletinB.h: No such
> file or directory 
> gmake: *** [All.o] Error 1 
> not done 
> *** Error code 1 
>  
> Stop. 
> make: stopped in
> /home/cngo/cvs/NetBSD/pkgsrc/parallel/sge 
> *** Error code 1 
>  
> ..... 
>  
> ************* 
>  
>  
> Quoting Ron Chen <[email protected]>: 
>  
> > SGE support for NetBSD was checked into the
> project 
> > cvs for a long time, you just need to get the SGE
> 5.3 
> > branch source tree from the SGE project site cvs. 
> >  
> >  -Ron 
> >  
> > --- MLH <[email protected]> wrote: 
> > > > Hi,  
> > > >   
> > > > Do you use Sun Grid Engine ? How does it work
> ? 
> > > I've checked your website but I  
> > > > don't see any information about how SGE.  
> > > >   
> > > > > for linkage analysis. We are running an 
> > > SGE-enabled version of  
> > > > > SOLAR that manages all compute tasks.
> Currently 
> > > the cluster is  
> > > > > composed of MP Athlons and a few
> experimental 
> > > Opteron boxes running  
> > > > > solaris86.  
> > >  
> > > We use GridEngine on Solaris/Solaris86. The
> cluster 
> > > is all running 
> > > Solaris86 right now. I had a local student
> working 
> > > to port SGE to 
> > > NetBSD for me last year. Several people were 
> > > apparently working on 
> > > it at the same time and it came together, but
> I've 
> > > been too busy 
> > > to do much with a NetBSD cluster right now. 
> > >  
> > > SGE is essentially integrated into the front-end
> of 
> > > our software. 
> > > All of tour software can run without SGE. It
> just 
> > > make things easier 
> > > to work iwth a cluster.  There is a custom
> version 
> > > of SOLAR that 
> > > embeds the SGE control mechanisms to launch and 
> > > manage the tasks 
> > > and we have many other scripts which use SGE to 
> > > manage custom 
> > > operations. We haven't implemented any smp-type 
> > > code. It's just 
> > > typical task-oriented code that we throw at a
> bunch 
> > > of processors 
> > > at the same time. Much of what we do can be
> broken 
> > > down for analysis 
> > > by marker, chromosome, trait, or individual etc.
> so 
> > > it's easier to 
> > > arrange to have several hundred cpus each run
> one 
> > > fairly linear 
> > > task at a time and report back when done.  Not 
> > > terribly fancy, but 
> > > quite effective. 
> > >  
> > > If you are interested, I can likely put you
> touch 
> > > with a couple of 
> > > people who develop the SGE management
> facilities. 
> > >  
> > >  
> >  
> >  
> >  
> > 	 
> > 		 
> > __________________________________ 
> > Do you Yahoo!? 
> > New and Improved Yahoo! Mail - 100MB free storage!
> 
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> >  
>  
>  
> --  
> Co Thai Ngo  
> Dept. of Biology   
> New Mexico State University   
> 



		
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