CVS commit: wip/blasr_libcpp

Module name:	wip
Committed by:	outpaddling
Date:		Fri Sep 11 16:48:33 UTC 2015

Modified Files:
	wip/blasr_libcpp: Makefile PLIST buildlink3.mk distinfo
	wip/blasr_libcpp/patches:
	    patch-alignment_ipc_SharedMemoryAllocator.hpp patch-configure.py
	    patch-pbdata_reads_HoleXY.hpp
Added Files:
	wip/blasr_libcpp/patches:
	    patch-alignment_datastructures_alignment_FilterCriteria.cpp
	    patch-alignment_datastructures_alignment_FilterCriteria.hpp
	    patch-alignment_format_SAMHeaderPrinter.cpp

Log Message:
Many improvements

To generate a diff of this commit:
cvs -z3 rdiff -u -r0 -r1.1 \
    wip/blasr_libcpp/patches/patch-alignment_datastructures_alignment_FilterCriteria.cpp \
    wip/blasr_libcpp/patches/patch-alignment_datastructures_alignment_FilterCriteria.hpp \
    wip/blasr_libcpp/patches/patch-alignment_format_SAMHeaderPrinter.cpp
cvs -z3 rdiff -u -r1.1 -r1.2 wip/blasr_libcpp/Makefile \
    wip/blasr_libcpp/PLIST wip/blasr_libcpp/buildlink3.mk \
    wip/blasr_libcpp/distinfo \
    wip/blasr_libcpp/patches/patch-alignment_ipc_SharedMemoryAllocator.hpp \
    wip/blasr_libcpp/patches/patch-configure.py \
    wip/blasr_libcpp/patches/patch-pbdata_reads_HoleXY.hpp

To view a diff of this commit:
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-alignment_datastructures_alignment_FilterCriteria.cpp?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-alignment_datastructures_alignment_FilterCriteria.hpp?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-alignment_format_SAMHeaderPrinter.cpp?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/Makefile?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/PLIST?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/buildlink3.mk?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/distinfo?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-alignment_ipc_SharedMemoryAllocator.hpp?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-configure.py?r1=1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/blasr_libcpp/patches/patch-pbdata_reads_HoleXY.hpp?r1=1.1&r2=1.2

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

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