Running out of memory compiling R
Jonathan <[email protected]>
| Newsgroups | gmane.os.netbsd.ports |
|---|---|
| Message-ID | <[email protected]> |
Version: NetBSD 1.6.2_STABLE
Platform: i386
pkgsrc: R-1.8.1nb2
Comment:
Statistical language for data analysis and graphics
I thought I would send in this fix I found for compiling the math
package R. The first time I tried to compile /usr/pkgsrc/math/R I ran
out of memory. Here is the message I got from the failed compile:
<SNIP>
model.matrix.reStruct text html latex example
needUpdate text html latex example
needUpdate.modelStruct text html latex example
ERROR: building help failed for package 'nlme'
** Removing '/usr/pkgsrc/math/R/work/R-1.8.1/library/nlme'
gmake[2]: *** [nlme.ts] Error 1
gmake[2]: Leaving directory
`/usr/pkgsrc/math/R/work/R-1.8.1/src/library/Recomme
nded'
gmake[1]: *** [recommended-packages] Error 2
gmake[1]: Leaving directory
`/usr/pkgsrc/math/R/work/R-1.8.1/src/library/Recomme
nded'
gmake: *** [stamp-recommended] Error 2
*** Error code 2
</SNIP>
I reset my limit in my C shell like so:
# limit memoryuse unlimited
# limit memorylocked unlimited
# limit openfiles 128
and the package compiled uneventfully. Here is the output of limit:
cputime unlimited
filesize unlimited
datasize 1048576 kbytes
stacksize 2048 kbytes
coredumpsize unlimited
memoryuse unlimited
memorylocked unlimited
maxproc 160
openfiles 128
Just thought I would send this in for anyone else that might google the
archives.
Kind
regards,
Jonathan