namd on oscar
"genie lfs" <[email protected]>
| Newsgroups | gmane.science.biology.informatics.clusters |
|---|---|
| Message-ID | <[email protected]> |
hello all.. i have built a 6 node cluster using oscar..the configuration is master and nodes on : FC3 , x86 processors , message passing interface being LAM/MPI i have tried mpi-povray and tachyon on them and was sucessful.. now i want to run namd on the cluster... but i am not able to decide what would be my architecture for the cluster in namd binaries or the souce code... can some body please help me in choosing my namd and charm architecture... i have tried using Linux-i686-TCP .. instead of distributing the process on 6 nodes it ran the same process on 6 nodes .. so obvioulsy my binary choice was wrong... please help.. santhu