Getting_started_MAC_OS_X_N1SGE6_parallel

[email protected]
Newsgroups gmane.science.biology.informatics.clusters
Message-ID <[email protected]>
Hi;

I am totally new to grid computing. I recently tried to run some 
sequence assembly process on a G5 (8Gb RAM) but the process did require 
more memory.

I installed N1SGE6 on 3 MACs G5 under 10.4.7 (connected trough a 
router) (alltogheter 13Gb RAM) and I would like to run the assembly 
process in parallel trough the cluster hoping that memory resources 
would be sufficient for the process to complete.

I would appreciate hints as to "for-dummies-fast-how-to" configure the 
cluster / submit the job properly.

I installed master and hosts with defaults settings. First try with 
examples/simple.sh returns (w. qmon):
No free slots for interactive job!
while 5 PCUs are available.

Any hint as to how to properly configure the 
cluster/project/queues/parallel environments; or to use qsub with 
usefull options -for a fast getting started- would be greatly 
appreciated; thanks.

François
lmpx.com only provides a reader for public news (NNTP) servers. It is not affiliated with the servers or forums shown here and is not responsible for the content of articles, which is written by their respective authors.