Re: interpro queuing system
David Allouche <[email protected]>
| Newsgroups | gmane.science.biology.informatics.clusters |
|---|---|
| Message-ID | <[email protected]> |
hello concerning interpro scan parallelisation. do you have the plane to use Jobarray (PBS et SGE) ? ( i.e ==> jobs identifier correspond on multiple sub job iteration ) example : qsub -J 1000 myjob.sh 3440338[].host <==> with 1000 iteration each one correspond at 3440338[01].host , 3440338[02].host ..... 3440338[1000].host regards dave Bernard Li wrote: >If we do not already have a SGE-Interpro HOWTO, perhaps it is time to >start one :-) > >Thanks, > >Bernard > > > >>-----Original Message----- >>From: [email protected] >>[mailto:[email protected]] >>On Behalf Of Chris Dagdigian >>Sent: Monday, August 28, 2006 12:06 >>To: HPC in Bioinformatics >>Subject: Re: [Bioclusters] interpro queuing system >> >> >>In many cases LSF is actually simpler to set up and configure than >>any of the competing systems (from an administrators view). >> >> From the perspective of Interpro integration it may be a different >>story, of course! I believe that there are a few people on this list >>using the SGE (Grid Engine) queuing system with Interpro. Perhaps >>they can lend a hand? You can find more information about >>grid engine >>online at http://gridengine.sunsource.net >> >>Also, a google search for "sge+interpro" yields some interesting hits. >> >> >> >>-Chris >> >> >> >>On Aug 28, 2006, at 10:49 AM, Michael Gang wrote: >> >> >> >>>Dear all, >>>I want to run interpro on an linux cluster. >>>We are trying to setup interpro with the queuing system qsub. >>>Is there another queuing system which is easier to setup (other >>>than LSF) ? >>> >>>Thanks in advance, >>>Michael >>>_______________________________________________ >>>Bioclusters maillist - [email protected] >>>https://bioinformatics.org/mailman/listinfo/bioclusters >>> >>> >>_______________________________________________ >>Bioclusters maillist - [email protected] >>https://bioinformatics.org/mailman/listinfo/bioclusters >> >> >> >_______________________________________________ >Bioclusters maillist - [email protected] >https://bioinformatics.org/mailman/listinfo/bioclusters > > > > -- ----------- Dr David Allouche Tel:+33 (0)5 61 28 52 77 Fax:+33 (0)5 61 28 53 35 MIA chem. de Borde Rouge BP 52627- 31326 Castanet Tolosan Cedex, france: