mpiBLAST memory leak?
"Iddo Friedberg" <[email protected]> Thu, 15 Nov 2007 10:32:58 -0800
| Newsgroups | gmane.science.biology.informatics.clusters |
|---|---|
| Message-ID | <[email protected]> |
I am running mpiBLAST 1.4.0 using mpich and SGE on a Rocks (4.2.1) cluster. I have been getting what seems to be consistent memory leaks that crashed nodes after about 5-6 hours of running. Memory consumption steadily increases until the node from which the job is running crashes. I tried setting P4_GLOBMEMSIZE to under sysctl.shmmax. Still no good. /var/log or the SGE logfiles do not contain information. Any ideas? Thanks, Iddo -- I. Friedberg "The only problem with troubleshooting is that sometimes trouble shoots back."