MPI-HMMER segmentation fault mpi error
"AbDdU!" <[email protected]> Thu, 12 Feb 2009 13:33:19 +0800
| Newsgroups | gmane.science.biology.informatics.clusters |
|---|---|
| Message-ID | <[email protected]> |
Dear all I have compiled mpi-hmmer recently openmpi (if not mistaken) ... when i run it using a small dataset it works fine ... but when i input a big dataset to search against .. like about 200MB ... it crashes on the first node, exits with "segmentation fault" and mpi-related error "errno=111" which is a "connection refused" type of error ... any clue on this? i dont think its mpi related, nor it is an ssh issue ... or is it? since i'v tried running the same problem on a compute node and it worked fine with no errors or such. What im sure of is that mpi is working fine as other software using it are working as expected ... any experience with such error? Thank you guys if you ever read this ... :) and hopefully guide me to the solution