Can't use package [pd.mapping250k.sty]
Marcelo Pereira <[email protected]>
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <CAC7p+=xpocrWN==2hkcv+o65Tfc8oV-X0q-xOmgbF4PgHSjqnQ@mail.gmail.com> |
Hello, I have been trying to use the package *[pd.mapping250k.sty]*, but I’m might be missing something. This is my procedure: > myData <- ReadAffy() > myData@cdfName [1] "Mapping250K_Sty" The CEL fled are loaded okay!! Then we proceed with the normalization procedure, and this is where the problem is: > eset <- rma(myData) *Error in getCdfInfo(object) :* * Could not obtain CDF environment, problems encountered: Specified environment does not contain Mapping250K_Sty* *Library - package mapping250kstycdf not installed* *Bioconductor - mapping250kstycdf not available* Then, I tried installing it: > biocLite(‘pd.mapping250k.sty’) > library(‘pd.mapping250k.sty’) The package installs okay (it is a ~350Mb package), and it DOES load properly, but when I tried to run rma(myData) again I get the same problem as above: *Error in getCdfInfo(object) :* * Could not obtain CDF environment, problems encountered: Specified environment does not contain Mapping250K_Sty* *Library - package mapping250kstycdf not installed* *Bioconductor - mapping250kstycdf not available* I CAN rma normalize other CEL files using hgu133plus2cdf, or hgu133acdf, but NOT with Mapping250K_Sty. Any suggestions? Thanks, Marcelo [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor