Re: Fwd: WGCNA: labeledHeatmap and verboseScatterplot correlations and p-values are not the same
Peter Langfelder <[email protected]>
| Newsgroups | gmane.science.biology.informatics.conductor |
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| Message-ID | <CA+hbrhV3gE8_+FuyOeMJ0hfqiAnVKZAYGJxNQGqycPAR1Nm9mw@mail.gmail.com> |
On Mon, Aug 11, 2014 at 3:11 PM, Sindre Lee <sindre.lee-/[email protected]> wrote: > > I have to re-think what my approach should be then. I want to find > weight-related genes and then find out how my intervention effects weight > through these genes. You may want to speak to a local statistician who can offer better advice than me over email. > > So if I want to answer the question "Which genes are changed during > intervention and associated the change in weight?", what would you suggest > as an approach? I don't know what your experimental design is, what are the controls - is it time 1, or is time 1 baseline, time 2 after treatment, and you have cases and controls? Are you interested in genes that relate to weight in general, or genes whose change with respect to intervention relates to change in weight with respect to intervention (you seem to indicate both in what you wrote but they are two different questions)? Peter _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor