Re: Issue with flowDensity on OpenCyto

If you type 'listgtMethods()', it will give you a list of registered methods

Gating Functions:
===  quantileGate
===  rangeGate
===  flowClust.2d
===  mindensity
...

If your method is not in the list, then you should first register it by 
'registerPlugins', e.g.
registerPlugins(fun = .flowDensity, methodName = "flowDensity")

Mike
On 08/12/2014 06:33 AM, DELANNOY Claire wrote:
>
> Dear Mr Jiang and Mr Finak,
>
> I try to do an automated gating on mass cytometry data. I wanted to 
> use openCyto , it worked to define my Singlets population with flowClust.
>
> Then I defined my Live singlets with flowDensity and I got an error :
>
> /Gating for 'liveSinglets'/
>
> /Erreur dans (function (fs, pp_res, gFunc, popAlias, channels, ...)  : /
>
> /  Can't gate using unregistered method .flowDensity/
>
> I read your posts on Github and especially the issue #62 . I wrote my 
> gating template in the same way as you (I attached the csv file and 
> the R script if needed)
>
> Do I need to do something to “register” flowDensity  so that openCyto 
> can use it?
>
> Thanks in advance!
>
> Claire
>
> **
>
> *Claire Delannoy*
>
> Technology Research Department – Bioinformatics Engineer
>
> Phone:  +33 (0) 4 69 85 16 96
>
> cid:[email protected] <http://www.bioaster.com/>
>
> 321 Avenue Jean Jaurès | Bâtiment Domilyon |69 007 LYON  France
>
> Website : http://www.bioaster.com <http://www.bioaster.com/>
>

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