b37 version of BSGenome for Gviz
mehaffey <[email protected]>
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <[email protected]> |
Hello, I am looking to see if there is a b37 package comparable to the BSgenome.Hsapiens.UCSC.hg19 package? I would like to use the plotTrack function of the Gviz package with my bam files but they were aligned using b37. The with and without chr seems to be causing a problem. I have exome and whole genome files so its a lot of resources to have them duplicated. Is there a b37 version package or a conversion workflow/tool? Many thanks, Michele [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor