Plate config for 1536 plate into cellHTS2
"Rossella Rispoli [guest]" <[email protected]>
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <[email protected]> |
Dear all A very simple question. I'm analysing some HTS data withe 1536 plate. But I got some trobule to understand the format of the plateConfig file for the 1536 plate. In my case for example I need to specifies the controls configuration as follows: AtoH column 1-3 RF AtoH column 4-8 RF plus TGFB ACtoAF column 1-3 UBB ACtoAF column 4-8 UBB plus TGFB Can someone can tell me how to write it in a regular expression acceptble from the CellHTS2? I tried in differten way but in the end I got success just in this way: * ^A0[1-3] RF_NoTGFB * ^B0[1-3] RF_NoTGFB * ^C0[1-3] RF_NoTGFB * ^D0[1-3] RF_NoTGFB * ^E0[1-3] RF_NoTGFB * ^F0[1-3] RF_NoTGFB * ^G0[1-3] RF_NoTGFB * ^H0[1-3] RF_NoTGFB * ^A0[4-8] RF_TGFB * ^B0[4-8] RF_TGFB * ^C0[4-8] RF_TGFB * ^D0[4-8] RF_TGFB * ^E0[4-8] RF_TGFB * ^F0[4-8] RF_TGFB * ^G0[4-8] RF_TGFB * ^H0[4-8] RF_TGFB * ^AC0[1-3] UBB_NoTGFB * ^AD0[1-3] UBB_NoTGFB * ^AE0[1-3] UBB_NoTGFB * ^AF0[1-3] UBB_NoTGFB * ^AC0[4-8] UBB_TGFB * ^AD0[4-8] UBB_TGFB * ^AE0[4-8] UBB_TGFB * ^AF0[4-8] UBB_TGFB Any help will be very much appreciated Thanks in advances, Rossella -- output of sessionInfo(): R version 3.1.1 (2014-07-10) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] grid parallel stats graphics grDevices utils datasets methods base other attached packages: [1] RODBC_1.3-10 cellHTS2_2.28.0 locfit_1.5-9.1 hwriter_1.3 vsn_3.32.0 splots_1.30.0 genefilter_1.46.1 Biobase_2.24.0 BiocGenerics_0.10.0 RColorBrewer_1.0-5 loaded via a namespace (and not attached): [1] affy_1.42.3 affyio_1.32.0 annotate_1.42.1 AnnotationDbi_1.26.0 BiocInstaller_1.14.2 Category_2.30.0 DBI_0.2-7 DEoptimR_1.0-1 GenomeInfoDb_1.0.2 graph_1.42.0 GSEABase_1.26.0 [12] IRanges_1.22.10 lattice_0.20-29 limma_3.20.8 MASS_7.3-33 Matrix_1.1-4 mvtnorm_1.0-0 pcaPP_1.9-49 prada_1.40.0 preprocessCore_1.26.1 RBGL_1.40.1 robustbase_0.91-1 [23] rrcov_1.3-4 RSQLite_0.11.4 splines_3.1.1 stats4_3.1.1 survival_2.37-7 tools_3.1.1 XML_3.98-1.1 xtable_1.7-3 zlibbioc_1.10.0 -- Sent via the guest posting facility at bioconductor.org. _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor