topGO
Steven Stadler <[email protected]> Tue, 26 Aug 2014 10:06:53 +0200
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <CAJ8c6_GmgtozxDBq5ANHvVCSe-bLVa6tuD9vZ1-wRbMu5ak+_A@mail.gmail.com> |
Hi! I am new to Bioconductor and topGO ... My aim is to make a go-term richment analysis on expression data with a control and two different infections. I managed to create my own goterm-gene mapping, but I dont know how to create my own geneList. I have a excel sheet with p-values, reads and so on ... How can I create this geneList in R? I am also a newbee in R ;-) I would create a csv File withe the genname and its p-value? But how can I parse it in R/bioconductor to use it for the creation of a topGO object? It would be nice, if someone could tell me the parse command :-) Or an example how I can create a topGO object with custom data. Thanx. Greetings Steven [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor