What are the best packages to compare multiple DE gene lists?

Stephane Plaisance | VIB | <[email protected]> Wed, 27 Aug 2014 12:48:12 +0200

Newsgroups	gmane.science.biology.informatics.conductor
Message-ID	<[email protected]>

I have full genome/exome lists of DE resulting from MA and/or RNASeq analyses using multiple methods (likely showing different gene even from the same samples due to technology biases). I would like to rank these lists to create a general list where redundant DE targets are pushed up and unique hits ranked lower.

What method/package should I start with?

Thanks

Stephane Plaisance
[email protected]
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