heatmap.2: Colv dendrogram doesn't match size of x
[email protected] Wed, 27 Aug 2014 20:06:56 -0300 (BRT)
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <[email protected]> |
Hi List, I've got some problems doing a heatmap with following peace of code: library(gplots) row_distance = dist(dfdat_zscore, method =manhattan") row_cluster = hclust(row_distance, method = "ward.D") col_distance = dist(dfdat_zscore, method = "manhattan") col_cluster = hclust(col_distance, method = "ward.D") heatmap.2(as.matrix(dfdat_zscore), main = "Z-score", notecol="black", density.info="none", trace="none", margins =c(12,9), col=redgreen(75), breaks=col_breaks, dendrogram = "both", cexCol=0.5, cexRow=0.5, key=T, keysize=1.0, Rowv = as.dendrogram(row_cluster), Colv = as.dendrogram(col_cluster), distfun = dist(method = "manhattan"), hclustfun = hclust(col_distance, method = "ward.D"), labRow=rownames(df_zscore)) I've read some posts suggesting to upgrade gplots. However, the issue seems to persist with gplots_2.14.1 Any help is appreciated. Best. Additional information: > sessionInfo() R version 3.1.1 (2014-07-10) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gplots_2.14.1 loaded via a namespace (and not attached): [1] KernSmooth_2.23-12 bitops_1.0-6 caTools_1.17 gdata_2.13.3 [5] gtools_3.4.1 [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor