Combing Effects (t-stats) from experiment with common reference design?
Atul <[email protected]> Thu, 28 Aug 2014 15:52:47 -0400
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <[email protected]> |
Hi All, I was wondering whether there is any approach to combine 't-stat' from different comparisons but using same control. These are my contrasts: Stage1 vs ControlX Stage2 vs ControlX Stage3 vs. ControlX ......... Stage 20 vs. ControlX Here the control is same i.e. same sample for all contrasts. From 'limma' analysis I have Fold change, t-stats and p-values for each gene. Now, is it possible to combine 't-stats' from all different stages to single value? Or compute a single combined value for all the contrasts. So, that this single metric could be used to rank genes across all time points. Is there any package available to do so? I can find methods to combine p-values but not the 't-stat'. Thanks AK [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor