parallel BAM sorting with Rsamtools
"Jens Reeder [guest]" <[email protected]> Fri, 29 Aug 2014 10:32:34 -0700 (PDT)
| Newsgroups | gmane.science.biology.informatics.conductor |
|---|---|
| Message-ID | <[email protected]> |
Hi, samtools now allows the sorting of bam files using several threads. This is incredibly useful for large BAM files, e.g. from whole-genome projects. Are there any plans of exposing the parallel sorting via Rsamtools' sortBam() and asBam(..., indexDestination=TRUE)? I couldn't find any mention of this in the mailing lists or elsewhere... thanks Jens -- output of sessionInfo(): . -- Sent via the guest posting facility at bioconductor.org. _______________________________________________ Bioconductor mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor