Error with autoplot of transcriptDB object

Hi all,

I've having problems running some code that was previously Ok for me. Can
anyone see what is going wrong? Did ggbio change how it plots transcripts?

Regards,

Mark

>library(TxDb.Hsapiens.UCSC.hg19.knownGene)
>txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene

>exons <- exonsBy(txdb, "gene")
>ibrary(ggbio)

>autoplot(txdb,which=exons[["49"]])

Parsing transcripts...
Parsing exons...
Parsing cds...
Parsing utrs...
------exons...
------cdss...
------introns...
------utr...
aggregating...
Done
"gap" is not matching to following arbitrary model terms"cds CDS Cds exon
EXON Exon utr UTR Utr"
Constructing graphics...
Error in `[[<-`(`*tmp*`, name, value = 1L) :
  1 elements in value to replace 0 elements




> sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8
LC_PAPER=en_GB.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods
base

other attached packages:
 [1] XVector_0.4.0
ggbio_1.12.10
 [3] ggplot2_1.0.0
TxDb.Hsapiens.UCSC.hg19.knownGene_2.14.0
 [5] GenomicFeatures_1.16.2
AnnotationDbi_1.26.0
 [7] Biobase_2.24.0
GenomicRanges_1.16.4
 [9] GenomeInfoDb_1.0.2
IRanges_1.22.10
[11] BiocGenerics_0.10.0

loaded via a namespace (and not attached):
 [1] BatchJobs_1.3            BBmisc_1.7
BiocParallel_0.6.1       biomaRt_2.20.0
 [5] Biostrings_2.32.1        biovizBase_1.12.3
bitops_1.0-6             brew_1.0-6
 [9] BSgenome_1.32.0          checkmate_1.3
cluster_1.15.2           codetools_0.2-9
[13] colorspace_1.2-4         DBI_0.2-7
dichromat_2.0-0          digest_0.6.4
[17] fail_1.2                 foreach_1.4.2
Formula_1.1-2            GenomicAlignments_1.0.6
[21] grid_3.1.1               gridExtra_0.9.1
gtable_0.1.2             Hmisc_3.14-4
[25] iterators_1.0.7          lattice_0.20-29
latticeExtra_0.6-26      MASS_7.3-34
[29] munsell_0.4.2            plyr_1.8.1
proto_0.3-10             RColorBrewer_1.0-5
[33] Rcpp_0.11.2              RCurl_1.95-4.1
reshape2_1.4             Rsamtools_1.16.1
[37] RSQLite_0.11.4           rtracklayer_1.24.2
scales_0.2.4             sendmailR_1.1-2
[41] splines_3.1.1            stats4_3.1.1
stringr_0.6.2            survival_2.37-7
[45] tools_3.1.1              VariantAnnotation_1.10.5
XML_3.98-1.1             zlibbioc_1.10.0

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