how to fetch GO categories from Chinese hamster genome

upendra kumar devisetty <[email protected]> Wed, 10 Sep 2014 11:32:02 -0700
Newsgroups gmane.science.biology.informatics.conductor
Message-ID <[email protected]>
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Hi,

I have been trying to generate GO category table for Chinese hamster genome=
 using getgo function in goseq package. Even though chinese hamster is said=
 to be included in the supportedGenomes() function of goseq, i am having tr=
ouble generating the GO category table. Does anybody have experience do thi=
s.

Here is what i have trying without much success...

genes <- c("EGV95676", "EGW04231", "EGV99641") # example gene list
getgo(genes, "criGri1", "ensGene")

And i get this error -=20

Error in library(paste(orgstring, "db", sep =3D "."), character.only =3D TR=
UE) :=20
  there is no package called =91NA.db=92

-------------------------------------------------
Upendra Kumar Devisetty, Ph.D
Postdoctoral Scholar
Dept. of Plant Biology, UC Davis
Davis, CA 95616


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