Re: BIND API

Dan Bolser <[email protected]> Wed, 23 Feb 2005 22:32:57 +0000 (GMT)

Newsgroups	gmane.science.biology.informatics.devel
Message-ID	<[email protected]>

On Wed, 23 Feb 2005, rich wrote:

>Hi, i can't seem to find any bioperl modules and i'm pretty sure the 
>seqhound api doesn't deal with the BIND database. Anyone got any neat 
>automated way of querying the db
>short of downloading the text files form the BIND site,

I have been using the text files to build a local mysql instance of the
BIND data. I found this a very useful and convenient way to construct
complex queries over the data.

If you like I can give you my perl parsers and schema, as I worked quite
hard to document the 'build' pipeline (although it is all manually
executed in about 5-10 steps).

Dan.

>
>cheers
>Rich
>_______________________________________________
>Biodevelopers mailing list
>[email protected]
>https://bioinformatics.org/mailman/listinfo/biodevelopers
>