Re: "Collection /db/system/security/exist/accounts cannot be created."

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Hi Tony,

Thanks, but still no luck. I don't have a 'run.sh'. [1]


That's odd. I have eXist 3.x and the EXIST_HOME/bin directory has the
following:

backup.bat  batch.d     client.sh   eXist_32x32.ico  run.bat  server.bat
 shutdown.bat  startup.bat
backup.sh   client.bat  deprecated  functions.d      *run.sh*   server.sh
shutdown.sh   startup.sh

These shell scripts make sure that all of the CLASS_PATH stuff gets setup
properly for running the
utilities like `org.exist.backup.ExportMain`.

If you're on Windows, you would use `run.bat`.


> After I made a
> script that no longer bombed out from missing dependencies, I ran
> 'org.exist.backup.ExportMain'.
>
> I got multiple messages of the form:
>
> INFO: None of content dirs exist:
> '/usr/local/src/exist3-data/expathrepo/doc-0.4.7/content' and
> '/usr/local/src/exist3-data/expathrepo/doc-0.4.7/doc'
>

Are you trying to execute from the build directory? Did you not run the
installer to place it all in a
user's directory? Are you running it from a container and pointing to a
data directory on the host
machine?


> then I got:
>
> 17:09:17.550 [main] ERROR org.exist.storage.DBBroker - no data found at
> tid 25; page 60995
> java.io.IOException: no data found at tid 25; page 60995
>         at org.exist.storage.index.BFile.getAsStream(BFile.java:492)
> ~[exist.jar:?]
>         at org.exist.storage.index.BFile.getAsStream(BFile.java:462)
> ~[exist.jar:?]
>         at
> org.exist.storage.NativeBroker.openCollection(NativeBroker.java:928)
> [exist.jar:?]
> ...
> 17:09:17.554 [main] ERROR org.exist.storage.DBBroker - Collection
> '/db/system/security/exist/accounts' found in subCollections set but is
> missing from collections.dbx!
> 17:09:17.569 [main] ERROR org.exist.storage.BrokerPools - Unable to
> initialize database instance 'exist':
> org.exist.storage.BrokerPoolServiceException: org.exist.EXistException:
> java.io.IOException: Collection /db/system/security/exist/accounts
> cannot be created.


Before doing anything -- like bringing the eXist server back up, you want
to make an emergency
backup. Be sure to make the target a local directory that exists and that
you have write permission
for. I use "~/backup/date-reason" (where "date" is the date that it shut
down and "reason" is "locked"
or "out-of-memory"). The "backup" directory exists in my exist user's home
directory.

/usr/local/* is not usually writable by ordinary users.

Let's start by locating where the EXIST_HOME/bin directory is.

-- 
Michael Westbay
Writer/System Administrator
http://www.japanesebaseball.com/

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<div dir=3D"ltr"><div dir=3D"ltr"><div>Hi Tony,</div><div><br></div></div><=
div class=3D"gmail_quote gmail_quote_container"><blockquote class=3D"gmail_=
quote" style=3D"margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,=
204);padding-left:1ex">
Thanks, but still no luck. I don&#39;t have a &#39;run.sh&#39;. [1]=C2=A0 <=
/blockquote><div><br></div><div>That&#39;s odd. I have eXist 3.x and the EX=
IST_HOME/bin directory has the following:</div><div><br></div><div style=3D=
"margin-left:40px">backup.bat =C2=A0batch.d =C2=A0 =C2=A0 client.sh =C2=A0 =
eXist_32x32.ico =C2=A0run.bat =C2=A0server.bat =C2=A0shutdown.bat =C2=A0sta=
rtup.bat<br>backup.sh =C2=A0 client.bat =C2=A0deprecated =C2=A0functions.d =
=C2=A0 =C2=A0 =C2=A0<b><span style=3D"background-color:rgb(255,255,255)">ru=
n.sh</span></b> =C2=A0 server.sh =C2=A0 shutdown.sh =C2=A0 startup.sh</div>=
<div><br></div><div>These shell scripts make sure that all of the CLASS_PAT=
H stuff gets setup properly for running the</div><div>utilities=C2=A0like `=
org.exist.backup.ExportMain`.</div><div><br></div><div>If you&#39;re on Win=
dows, you would use `run.bat`.</div><div>=C2=A0</div><blockquote class=3D"g=
mail_quote" style=3D"margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204=
,204,204);padding-left:1ex">After I made a<br>
script that no longer bombed out from missing dependencies, I ran<br>
&#39;org.exist.backup.ExportMain&#39;.<br>
<br>
I got multiple messages of the form:<br>
<br>
INFO: None of content dirs exist: <br>
&#39;/usr/local/src/exist3-data/expathrepo/doc-0.4.7/content&#39; and <br>
&#39;/usr/local/src/exist3-data/expathrepo/doc-0.4.7/doc&#39;<br></blockquo=
te><div><br></div><div>Are you trying to execute from the build directory? =
Did you not run the installer to place it all in a</div><div>user&#39;s dir=
ectory? Are you running it from a container and pointing to a data director=
y on the host</div><div>machine?</div><div>=C2=A0</div><blockquote class=3D=
"gmail_quote" style=3D"margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(2=
04,204,204);padding-left:1ex">then I got:<br>
<br>
17:09:17.550 [main] ERROR org.exist.storage.DBBroker - no data found at <br=
>
tid 25; page 60995<br>
java.io.IOException: no data found at tid 25; page 60995<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 at org.exist.storage.index.BFile.getAsStream(BF=
ile.java:492) ~[exist.jar:?]<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 at org.exist.storage.index.BFile.getAsStream(BF=
ile.java:462) ~[exist.jar:?]<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 at org.exist.storage.NativeBroker.openCollectio=
n(NativeBroker.java:928) <br>
[exist.jar:?]<br>
...<br>
17:09:17.554 [main] ERROR org.exist.storage.DBBroker - Collection <br>
&#39;/db/system/security/exist/accounts&#39; found in subCollections set bu=
t is <br>
missing from collections.dbx!<br>
17:09:17.569 [main] ERROR org.exist.storage.BrokerPools - Unable to <br>
initialize database instance &#39;exist&#39;: <br>
org.exist.storage.BrokerPoolServiceException: org.exist.EXistException: <br=
>
java.io.IOException: Collection /db/system/security/exist/accounts <br>
cannot be created.</blockquote><div><br></div><div>Before doing anything --=
 like bringing the eXist server back up, you want to make an emergency</div=
><div>backup. Be sure to make the target a local directory that exists and =
that you have write permission</div><div>for. I use &quot;~/backup/date-rea=
son&quot; (where &quot;date&quot; is the date that it shut down and &quot;r=
eason&quot; is &quot;locked&quot;</div><div>or &quot;out-of-memory&quot;). =
The &quot;backup&quot; directory exists in my exist user&#39;s home directo=
ry.</div><div><br></div><div>/usr/local/* is not usually writable by ordina=
ry users.=C2=A0</div><div><br></div><div>Let&#39;s start by locating where =
the EXIST_HOME/bin directory is.</div><div>=C2=A0</div></div><span class=3D=
"gmail_signature_prefix">-- </span><br><div dir=3D"ltr" class=3D"gmail_sign=
ature">Michael Westbay<br>Writer/System Administrator<br><a href=3D"http://=
www.japanesebaseball.com/" target=3D"_blank">http://www.japanesebaseball.co=
m/</a></div></div>

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