mcrypt not loading

I'm getting a undefined function mcrypt_get_iv_size().  From the command line I see that mcrypt is getting loaded, but from phpinfo(), mcrypt isn't getting loaded.  I cannot see any errors or why php isn't getting loaded.  Can anybody explain to me what is going on?

I'm using nginx if that makes any difference.


Below is the output of running the command lines and from phpinfo():

# php --ini
Configuration File (php.ini) Path: /etc/php5/cli
Loaded Configuration File:         /etc/php5/cli/php.ini
Scan for additional .ini files in: /etc/php5/cli/conf.d
Additional .ini files parsed:      /etc/php5/cli/conf.d/05-opcache.ini,
/etc/php5/cli/conf.d/10-pdo.ini,
/etc/php5/cli/conf.d/20-gd.ini,
/etc/php5/cli/conf.d/20-json.ini,
/etc/php5/cli/conf.d/20-ldap.ini,
/etc/php5/cli/conf.d/20-mcrypt.ini,
/etc/php5/cli/conf.d/20-mysql.ini,
/etc/php5/cli/conf.d/20-mysqli.ini,
/etc/php5/cli/conf.d/20-pdo_mysql.ini,
/etc/php5/cli/conf.d/20-pdo_sqlite.ini,
/etc/php5/cli/conf.d/20-readline.ini,
/etc/php5/cli/conf.d/20-sqlite3.ini,
/etc/php5/cli/conf.d/20-xdebug.ini

# php -v
PHP 5.5.9-1ubuntu4.4 (cli) (built: Sep  4 2014 06:56:34) 
Copyright (c) 1997-2014 The PHP Group
Zend Engine v2.5.0, Copyright (c) 1998-2014 Zend Technologies
    with Zend OPcache v7.0.3, Copyright (c) 1999-2014, by Zend Technologies
    with Xdebug v2.2.3, Copyright (c) 2002-2013, by Derick Rethans

# php -m | grep mcrypt
mcrypt

# ls -al /etc/php5/fpm/conf.d
total 8
drwxr-xr-x 2 root root 4096 Sep 29 13:03 .
drwxr-xr-x 4 root root 4096 Sep 29 13:22 ..
lrwxrwxrwx 1 root root   32 Sep 10 12:19 05-opcache.ini -> ../../mods-available/opcache.ini
lrwxrwxrwx 1 root root   28 Sep 10 12:19 10-pdo.ini -> ../../mods-available/pdo.ini
lrwxrwxrwx 1 root root   27 Sep 20 12:57 20-gd.ini -> ../../mods-available/gd.ini
lrwxrwxrwx 1 root root   29 Sep 10 12:19 20-json.ini -> ../../mods-available/json.ini
lrwxrwxrwx 1 root root   29 Sep 20 12:57 20-ldap.ini -> ../../mods-available/ldap.ini
lrwxrwxrwx 1 root root   31 Sep 29 13:03 20-mcrypt.ini -> ../../mods-available/mcrypt.ini
lrwxrwxrwx 1 root root   31 Sep 10 12:25 20-mysqli.ini -> ../../mods-available/mysqli.ini
lrwxrwxrwx 1 root root   30 Sep 10 12:25 20-mysql.ini -> ../../mods-available/mysql.ini
lrwxrwxrwx 1 root root   34 Sep 10 12:25 20-pdo_mysql.ini -> ../../mods-available/pdo_mysql.ini
lrwxrwxrwx 1 root root   35 Sep 20 12:57 20-pdo_sqlite.ini -> ../../mods-available/pdo_sqlite.ini
lrwxrwxrwx 1 root root   33 Sep 20 12:57 20-readline.ini -> ../../mods-available/readline.ini
lrwxrwxrwx 1 root root   32 Sep 20 12:57 20-sqlite3.ini -> ../../mods-available/sqlite3.ini
lrwxrwxrwx 1 root root   31 Sep 20 12:57 20-xdebug.ini -> ../../mods-available/xdebug.ini

From phpinfo():

PHP Version 5.5.9-1ubuntu4.4

Configuration File (php.ini) Path /etc/php5/fpm

Loaded Configuration File /etc/php5/fpm/php.ini

Scan this dir for additional .ini files /etc/php5/fpm/conf.d

Additional .ini files parsed /etc/php5/fpm/conf.d/05-opcache.ini, /etc/php5/fpm/conf.d/10-pdo.ini, /etc/php5/fpm/conf.d/20-gd.ini, /etc/php5/fpm/conf.d/20-json.ini, /etc/php5/fpm/conf.d/20-ldap.ini, /etc/php5/fpm/conf.d/20-mysql.ini, /etc/php5/fpm/conf.d/20-mysqli.ini, /etc/php5/fpm/conf.d/20-pdo_mysql.ini, /etc/php5/fpm/conf.d/20-pdo_sqlite.ini, /etc/php5/fpm/conf.d/20-readline.ini, /etc/php5/fpm/conf.d/20-sqlite3.ini, /etc/php5/fpm/conf.d/20-xdebug.ini

PHP API 20121113

PHP Extension 20121212

Zend Extension 220121212 

This program makes use of the Zend Scripting Language Engine:
Zend Engine v2.5.0, Copyright (c) 1998-2014 Zend Technologies
    with DBG v7.0.29, (C) 2000,2014, by Dmitri Dmitrienko
    with Zend OPcache v7.0.3, Copyright (c) 1999-2014, by Zend Technologies
    with Xdebug v2.2.3, Copyright (c) 2002-2013, by Derick Rethans