Problem with DBD-Pg

[email protected] ("Farrer, Rhys") Tue, 19 Jan 2010 13:24:06 +0000
Newsgroups	perl.dbd.pg
Message-ID	<[email protected]>
Dear DBD-Pg people,

I am getting some error messages when I try and instal DBD Pg, and I believe this is why I am unable to get other programs (Namely Chado for Gbrowse) to work later on. Are the error messages below typical or not a problem, if they are a problem have you any idea how I might get round this. I am running Mac, 10.6.2

Thanks in advance,
Rhys

rhys-farrers-imac:DBD-Pg-2.16.0 rhysfarrer$ perl Makefile.PL
Configuring DBD::Pg 2.16.0
PostgreSQL version: 80402 (default port: 5432)
POSTGRES_HOME: (not set)
POSTGRES_INCLUDE: /Library/PostgreSQL/8.4/include
POSTGRES_LIB: /Library/PostgreSQL/8.4/lib
OS: darwin
Multiple copies of Driver.xst found in: /Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI/ /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level/auto/DBI/ at Makefile.PL line 167
Checking if your kit is complete...
Looks good
Multiple copies of Driver.xst found in: /Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI/ /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level/auto/DBI/ at Makefile.PL line 265
Using DBI 1.609 (for perl 5.010000 on darwin-thread-multi-2level) installed in /Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI/
Writing Makefile for DBD::Pg
rhys-farrers-imac:DBD-Pg-2.16.0 rhysfarrer$
rhys-farrers-imac:DBD-Pg-2.16.0 rhysfarrer$ make
gcc-4.2 -c  -I/Library/PostgreSQL/8.4/include -I/Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI -arch x86_64 -arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include -DPGLIBVERSION=80402 -DPGDEFPORT=5432 -Os  -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"2.16.0\" -DXS_VERSION=\"2.16.0\"  "-I/System/Library/Perl/5.10.0/darwin-thread-multi-2level/CORE"   Pg.c
gcc-4.2 -c  -I/Library/PostgreSQL/8.4/include -I/Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI -arch x86_64 -arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include -DPGLIBVERSION=80402 -DPGDEFPORT=5432 -Os  -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"2.16.0\" -DXS_VERSION=\"2.16.0\"  "-I/System/Library/Perl/5.10.0/darwin-thread-multi-2level/CORE"   dbdimp.c
dbdimp.c: In function ‘pg_db_login’:
dbdimp.c:115: warning: format not a string literal and no format arguments
dbdimp.c:180: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_warn’:
dbdimp.c:311: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_STORE_attrib’:
dbdimp.c:1263: warning: format not a string literal and no format arguments
dbdimp.c:1264: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare’:
dbdimp.c:1451: warning: format not a string literal and no format arguments
dbdimp.c:1452: warning: format not a string literal and no format arguments
dbdimp.c:1496: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_split_statement’:
dbdimp.c:1567: warning: format not a string literal and no format arguments
dbdimp.c:1573: warning: format not a string literal and no format arguments
dbdimp.c:1574: warning: format not a string literal and no format arguments
dbdimp.c:1726: warning: format not a string literal and no format arguments
dbdimp.c:1849: warning: format not a string literal and no format arguments
dbdimp.c:1873: warning: format not a string literal and no format arguments
dbdimp.c:1884: warning: format not a string literal and no format arguments
dbdimp.c:1885: warning: format not a string literal and no format arguments
dbdimp.c:1899: warning: format not a string literal and no format arguments
dbdimp.c:1900: warning: format not a string literal and no format arguments
dbdimp.c:1959: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare_statement’:
dbdimp.c:2032: warning: format not a string literal and no format arguments
dbdimp.c:2075: warning: format not a string literal and no format arguments
dbdimp.c:2119: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_bind_ph’:
dbdimp.c:2251: warning: format not a string literal and no format arguments
dbdimp.c:2346: warning: format not a string literal and no format arguments
dbdimp.c:2347: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_destringify_array’:
dbdimp.c:2560: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_execute’:
dbdimp.c:2860: warning: format not a string literal and no format arguments
dbdimp.c:2861: warning: format not a string literal and no format arguments
dbdimp.c:2924: warning: format not a string literal and no format arguments
dbdimp.c:2929: warning: format not a string literal and no format arguments
dbdimp.c:2934: warning: format not a string literal and no format arguments
dbdimp.c:2958: warning: format not a string literal and no format arguments
dbdimp.c:2968: warning: format not a string literal and no format arguments
dbdimp.c:2969: warning: format not a string literal and no format arguments
dbdimp.c:3094: warning: format not a string literal and no format arguments
dbdimp.c:3106: warning: format not a string literal and no format arguments
dbdimp.c:3155: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_fetch’:
dbdimp.c:3334: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_deallocate_statement’:
dbdimp.c:3555: warning: format not a string literal and no format arguments
dbdimp.c:3576: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_savepoint’:
dbdimp.c:4041: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_rollback_to’:
dbdimp.c:4078: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_release’:
dbdimp.c:4115: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_login’:
dbdimp.c:115: warning: format not a string literal and no format arguments
dbdimp.c:180: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_warn’:
dbdimp.c:311: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_STORE_attrib’:
dbdimp.c:1263: warning: format not a string literal and no format arguments
dbdimp.c:1264: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare’:
dbdimp.c:1451: warning: format not a string literal and no format arguments
dbdimp.c:1452: warning: format not a string literal and no format arguments
dbdimp.c:1496: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_split_statement’:
dbdimp.c:1567: warning: format not a string literal and no format arguments
dbdimp.c:1573: warning: format not a string literal and no format arguments
dbdimp.c:1574: warning: format not a string literal and no format arguments
dbdimp.c:1726: warning: format not a string literal and no format arguments
dbdimp.c:1849: warning: format not a string literal and no format arguments
dbdimp.c:1873: warning: format not a string literal and no format arguments
dbdimp.c:1884: warning: format not a string literal and no format arguments
dbdimp.c:1885: warning: format not a string literal and no format arguments
dbdimp.c:1899: warning: format not a string literal and no format arguments
dbdimp.c:1900: warning: format not a string literal and no format arguments
dbdimp.c:1959: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare_statement’:
dbdimp.c:2032: warning: format not a string literal and no format arguments
dbdimp.c:2075: warning: format not a string literal and no format arguments
dbdimp.c:2119: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_bind_ph’:
dbdimp.c:2251: warning: format not a string literal and no format arguments
dbdimp.c:2346: warning: format not a string literal and no format arguments
dbdimp.c:2347: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_destringify_array’:
dbdimp.c:2560: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_execute’:
dbdimp.c:2860: warning: format not a string literal and no format arguments
dbdimp.c:2861: warning: format not a string literal and no format arguments
dbdimp.c:2924: warning: format not a string literal and no format arguments
dbdimp.c:2929: warning: format not a string literal and no format arguments
dbdimp.c:2934: warning: format not a string literal and no format arguments
dbdimp.c:2958: warning: format not a string literal and no format arguments
dbdimp.c:2968: warning: format not a string literal and no format arguments
dbdimp.c:2969: warning: format not a string literal and no format arguments
dbdimp.c:3094: warning: format not a string literal and no format arguments
dbdimp.c:3106: warning: format not a string literal and no format arguments
dbdimp.c:3155: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_fetch’:
dbdimp.c:3334: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_deallocate_statement’:
dbdimp.c:3555: warning: format not a string literal and no format arguments
dbdimp.c:3576: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_savepoint’:
dbdimp.c:4041: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_rollback_to’:
dbdimp.c:4078: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_release’:
dbdimp.c:4115: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_login’:
dbdimp.c:115: warning: format not a string literal and no format arguments
dbdimp.c:180: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_warn’:
dbdimp.c:311: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_STORE_attrib’:
dbdimp.c:1263: warning: format not a string literal and no format arguments
dbdimp.c:1264: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare’:
dbdimp.c:1451: warning: format not a string literal and no format arguments
dbdimp.c:1452: warning: format not a string literal and no format arguments
dbdimp.c:1496: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_split_statement’:
dbdimp.c:1567: warning: format not a string literal and no format arguments
dbdimp.c:1573: warning: format not a string literal and no format arguments
dbdimp.c:1574: warning: format not a string literal and no format arguments
dbdimp.c:1726: warning: format not a string literal and no format arguments
dbdimp.c:1849: warning: format not a string literal and no format arguments
dbdimp.c:1873: warning: format not a string literal and no format arguments
dbdimp.c:1884: warning: format not a string literal and no format arguments
dbdimp.c:1885: warning: format not a string literal and no format arguments
dbdimp.c:1899: warning: format not a string literal and no format arguments
dbdimp.c:1900: warning: format not a string literal and no format arguments
dbdimp.c:1959: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_prepare_statement’:
dbdimp.c:2032: warning: format not a string literal and no format arguments
dbdimp.c:2075: warning: format not a string literal and no format arguments
dbdimp.c:2119: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_bind_ph’:
dbdimp.c:2251: warning: format not a string literal and no format arguments
dbdimp.c:2346: warning: format not a string literal and no format arguments
dbdimp.c:2347: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_destringify_array’:
dbdimp.c:2560: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_execute’:
dbdimp.c:2860: warning: format not a string literal and no format arguments
dbdimp.c:2861: warning: format not a string literal and no format arguments
dbdimp.c:2924: warning: format not a string literal and no format arguments
dbdimp.c:2929: warning: format not a string literal and no format arguments
dbdimp.c:2934: warning: format not a string literal and no format arguments
dbdimp.c:2958: warning: format not a string literal and no format arguments
dbdimp.c:2968: warning: format not a string literal and no format arguments
dbdimp.c:2969: warning: format not a string literal and no format arguments
dbdimp.c:3094: warning: format not a string literal and no format arguments
dbdimp.c:3106: warning: format not a string literal and no format arguments
dbdimp.c:3155: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_fetch’:
dbdimp.c:3334: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_st_deallocate_statement’:
dbdimp.c:3555: warning: format not a string literal and no format arguments
dbdimp.c:3576: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_savepoint’:
dbdimp.c:4041: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_rollback_to’:
dbdimp.c:4078: warning: format not a string literal and no format arguments
dbdimp.c: In function ‘pg_db_release’:
dbdimp.c:4115: warning: format not a string literal and no format arguments
gcc-4.2 -c  -I/Library/PostgreSQL/8.4/include -I/Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI -arch x86_64 -arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include -DPGLIBVERSION=80402 -DPGDEFPORT=5432 -Os  -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"2.16.0\" -DXS_VERSION=\"2.16.0\"  "-I/System/Library/Perl/5.10.0/darwin-thread-multi-2level/CORE"   quote.c
quote.c: In function ‘null_quote’:
quote.c:44: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_string’:
quote.c:76: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_geom’:
quote.c:118: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_path’:
quote.c:149: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_circle’:
quote.c:181: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bytea’:
quote.c:222: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bool’:
quote.c:280: warning: format not a string literal and no format arguments
quote.c:294: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_int’:
quote.c:309: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_float’:
quote.c:334: warning: assignment discards qualifiers from pointer target type
quote.c:358: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_name’:
quote.c:404: warning: format not a string literal and no format arguments
quote.c:413: warning: format not a string literal and no format arguments
quote.c: In function ‘null_quote’:
quote.c:44: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_string’:
quote.c:76: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_geom’:
quote.c:118: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_path’:
quote.c:149: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_circle’:
quote.c:181: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bytea’:
quote.c:222: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bool’:
quote.c:280: warning: format not a string literal and no format arguments
quote.c:294: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_int’:
quote.c:309: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_float’:
quote.c:334: warning: assignment discards qualifiers from pointer target type
quote.c:358: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_name’:
quote.c:404: warning: format not a string literal and no format arguments
quote.c:413: warning: format not a string literal and no format arguments
quote.c: In function ‘null_quote’:
quote.c:44: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_string’:
quote.c:76: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_geom’:
quote.c:118: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_path’:
quote.c:149: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_circle’:
quote.c:181: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bytea’:
quote.c:222: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_bool’:
quote.c:280: warning: format not a string literal and no format arguments
quote.c:294: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_int’:
quote.c:309: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_float’:
quote.c:334: warning: assignment discards qualifiers from pointer target type
quote.c:358: warning: format not a string literal and no format arguments
quote.c: In function ‘quote_name’:
quote.c:404: warning: format not a string literal and no format arguments
quote.c:413: warning: format not a string literal and no format arguments
gcc-4.2 -c  -I/Library/PostgreSQL/8.4/include -I/Library/Perl/5.10.0/darwin-thread-multi-2level/auto/DBI -arch x86_64 -arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include -DPGLIBVERSION=80402 -DPGDEFPORT=5432 -Os  -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"2.16.0\" -DXS_VERSION=\"2.16.0\"  "-I/System/Library/Perl/5.10.0/darwin-thread-multi-2level/CORE"   types.c
Running Mkbootstrap for DBD::Pg ()
chmod 644 Pg.bs
rm -f blib/arch/auto/DBD/Pg/Pg.bundle
LD_RUN_PATH="/Library/PostgreSQL/8.4/lib" gcc-4.2 -mmacosx-version-min=10.6  -arch x86_64 -arch i386 -arch ppc -bundle -undefined dynamic_lookup -L/usr/local/lib Pg.o dbdimp.o quote.o types.o  -o blib/arch/auto/DBD/Pg/Pg.bundle     \
           -L/Library/PostgreSQL/8.4/lib -lpq -lm       \

ld: warning: in /Library/PostgreSQL/8.4/lib/libpq.dylib, missing required architecture x86_64 in file
chmod 755 blib/arch/auto/DBD/Pg/Pg.bundle
cp Pg.bs blib/arch/auto/DBD/Pg/Pg.bs
chmod 644 blib/arch/auto/DBD/Pg/Pg.bs
Manifying blib/man3/Bundle::DBD::Pg.3pm
Manifying blib/man3/DBD::Pg.3pm
rhys-farrers-imac:DBD-Pg-2.16.0 rhysfarrer$