Re: Please some one write blog on gmt 5 installation

Hi Peter,

Could not be the only problem, but the correct cmake command is:

cmake -DCMAKE_INSTALL_PREFIX=/home/peter/software/gmt5 ..

The ".." is very important here.

Regards,

Marcelo



On Fri, Jan 31, 2014 at 4:26 PM, Peter <[email protected]> wrote:

> Not working, Please someone help me... what I have to change in
> ConfigUser.cmake ? where to set netcdf and hdf ? what I am doing wrong ?
>
> I tried as you said
>
> $ tar -xf gmt-5.1.0-src.tar.gz
> $ cd gmt-5.1.0/
> $ cd cmake/
> $ cp ConfigUserTemplate.cmake ConfigUser.cmake
> $ cd ..
> $ mkdir build
> $ cd build
> $ cmake -DCMAKE_INSTALL_PREFIX=/home/peter/software/gmt5
> CMake Error: The source directory "/home/peter/gmt-5.1.0/build" does not
> appear to contain CMakeLists.txt.
> Specify --help for usage, or press the help button on the CMake GUI.
>
> $ cat ConfigUser.cmake
>
> #
> # $Id: ConfigUserTemplate.cmake 12425 2013-11-01 10:09:27Z fwobbe $
> #
> # Copyright (c) 1991-2013 by P. Wessel, W. H. F. Smith, R. Scharroo, J.
> Luis and F. Wobbe
> # See LICENSE.TXT file for copying and redistribution conditions.
> #
> # This program is free software; you can redistribute it and/or modify it
> # under the terms of the GNU Lesser General Public License as published by
> the
> # Free Software Foundation; version 3 or any later version.
> #
> # This program is distributed in the hope that it will be useful, but
> WITHOUT
> # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
> # FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
> License
> # for more details.
> #
> # Contact info: gmt.soest.hawaii.edu
> #
> ----------------------------------------------------------------------------
>
> # Use this file to override variables in 'ConfigDefault.cmake' on a
> per-user
> # basis.  First copy 'ConfigUserTemplate.cmake' to 'ConfigUser.cmake', then
> # edit 'ConfigUser.cmake'.  'ConfigUser.cmake' is not version controlled
> # (currently listed in svn:ignore property)
> #
> # Note: CMake considers an empty string, "FALSE", "OFF", "NO", or any
> string
> # ending in "-NOTFOUND" to be false (this happens to be case-insensitive,
> so
> # "False", "off", "no", and "something-NotFound" are all false).  Other
> values
> # are true.  Thus it does not matter whether you use TRUE and FALSE, ON and
> # OFF, or YES and NO for your booleans.
>
> ##
> ## Section 1: Installation paths
> ##
>
> #
> ============================================================================
> # Basic setup begins here.  All settings are optional.  In most cases,
> setting
> # CMAKE_INSTALL_PREFIX should be all you need to do in order to build GMT
> with
> # reasonable defaults enabled.
> #
> ============================================================================
>
> # Installation path (usually defaults to /usr/local) [auto]:
> set (CMAKE_INSTALL_PREFIX "/home/peter/software")
>
> # Set install name suffix used for directories and gmt executables
> # [undefined]:
> set (GMT_INSTALL_NAME_SUFFIX "gmt5")
>
> # Install into traditional directory structure. Disable to install a
> # distribution type directory structure (doc and share separated) [on]:
> #set (GMT_INSTALL_TRADITIONAL_FOLDERNAMES OFF)
>
> # Install convenience links for GMT modules. Disable to install only the
> main
> # gmt program and access modules as "gmt modulename options" [TRUE]:
> #set (GMT_INSTALL_MODULE_LINKS FALSE)
>
> #
> ============================================================================
> # Advanced configuration begins here.  Usually it is not necessary to edit
> any
> # settings below.  You should know what you are doing if you do though.
>  Note:
> # installation paths are relative to ${CMAKE_INSTALL_PREFIX} unless
> absolute
> # path is given.
> #
> ============================================================================
>
> # Set binary installation path [bin]:
> #set (GMT_BINDIR "bin")
>
> # Set library installation path [lib or lib64]:
> #set (GMT_LIBDIR "lib")
>
> # Set include installation path [include/gmt${GMT_INSTALL_NAME_SUFFIX}]:
> #set (GMT_INCLUDEDIR "include/gmt")
>
> # Set share installation path [share or
> share/gmt${GMT_INSTALL_NAME_SUFFIX}]:
> #set (GMT_DATADIR "share/gmt")
>
> # Set doc installation path [share/doc or
> # share/doc/gmt${GMT_INSTALL_NAME_SUFFIX}]:
> #set (GMT_DOCDIR "share/doc/gmt")
>
> # Set manpage installation path [share/man or
> # share/doc/gmt${GMT_INSTALL_NAME_SUFFIX}/man]:
> #set (GMT_MANDIR "share/doc/gmt/man")
>
> # Install documentation files from this external location instead of
> creating
> # new PDF and HTML documents from scratch [${GMT_SOURCE_DIR}/doc_release]:
> #set (GMT_INSTALL_EXTERNAL_DOC OFF)
>
> # Install manual pages from this external location instead of creating the
> # manpages from scratch [${GMT_SOURCE_DIR}/man_release]:
> #set (GMT_INSTALL_EXTERNAL_MAN OFF)
>
> ##
> ## Section 2: Build dependencies (should only be needed if CMake cannot
> ## automatically detect the rights version or path.)
> ##
>
> # Set path to GSHHG Shoreline Database [auto]:
> #set (GSHHG_ROOT "gshhg_path")
>
> # Copy GSHHG files to $/coast [FALSE]:
> #set (COPY_GSHHG TRUE)
>
> # Set path to DCW Digital Chart of the World for GMT [auto]:
> #set (DCW_ROOT "dcw-gmt_path")
>
> # Copy DCW files to $/dcw [FALSE]:
> #set (COPY_DCW TRUE)
>
> # Set location of NetCDF (can be root directory, path to header file or
> path
> # to nc-config) [auto]:
> #set (NETCDF_ROOT "netcdf_install_prefix")
>
> # Set location of GDAL (can be root directory, path to header file or path
> to
> # gdal-config) [auto]:
> #set (GDAL_ROOT "gdal_install_prefix")
>
> # Set location of PCRE (can be root directory, path to header file or path
> to
> # pcre-config) [auto]:
> #set (PCRE_ROOT "pcre_install_prefix")
>
> # Set location of single precision FFTW (can be root directory or path to
> # header file) [auto]:
> #set (FFTW3_ROOT "fftw_install_prefix")
>
> # Set location of ZLIB (can be root directory or path to header file)
> [auto]:
> #set (ZLIB_ROOT "zlib_install_prefix")
>
> ##
> ## Section 3: GMT features
> ##
>
> # Enforce GPL or LGPL conformity. Use this to disable routines that cannot
> be
> # redistributed under the terms of the GPL or LGPL such as Shewchuk's
> # triangulation (valid values are GPL, LGPL and off) [off]:
> #set (LICENSE_RESTRICTED GPL)
>
> # Configure default units (possible values are SI and US) [SI]:
> #set (UNITS "US")
>
> # Enable file locking [FALSE]:
> #set (FLOCK TRUE)
>
> # Enable building of shared libraries [TRUE] (disable to use static
> libraries;
> # not recommended):
> #set (BUILD_SHARED_LIBS FALSE)
>
> # Build GMT shared lib with supplemental modules [TRUE]:
> #set (BUILD_SUPPLEMENTS FALSE)
>
> ##
> ## Section 4: Advanced tweaking
> ##
>
> #
> # Testing and development
> #
>
> # Enable running examples/tests with "ctest" or "make check"
> (out-of-source).
> # Need to set either DO_EXAMPLES, DO_TESTS or both and uncomment the
> following
> # line.
> #enable_testing()
> #set (DO_EXAMPLES TRUE)
> #set (DO_TESTS TRUE)
> # Number of parallel test jobs with "make check":
> #set (N_TEST_JOBS 4)
>
> # Enable this option to run GMT programs from within ${GMT_BINARY_DIR}
> without
> # installing or setting GMT_SHAREDIR and GMT_USERDIR first. This is
> required
> # for testing [OFF]:
> #set (SUPPORT_EXEC_IN_BINARY_DIR ON)
>
> # List extra sub-dirs of 'src' with a CMakeList.txt to build non-module
> codes
> # that link against the full gmt libs (not just the API; for building codes
> # that only need the GMT API, see the gmtextension project).
> #set (EXTRA_BUILD_DIRS apidemo)
>
> # Directory in which to install the release sources per default
> # [${GMT_BINARY_DIR}/gmt-${GMT_PACKAGE_VERSION}]:
> #set (GMT_RELEASE_PREFIX "release-src-prefix")
>
> # If set to false, image conversion from PS images to PNG and PDF does
> # not depend on the gmt binary target. Note: "make gmt" is then required
> # before docs_depends [TRUE].
> #set (GMT_DOCS_DEPEND_ON_GMT FALSE)
>
> #
> # Debugging
> #
>
> # Set build type can be: empty, Debug, Release, RelWithDebInfo or
> MinSizeRel
> # [Release]:
> #set (CMAKE_BUILD_TYPE Debug)
>
> # Extra debugging for developers:
> #add_definitions(-DDEBUG)
> #add_definitions(-DMEMDEBUG) # Turn on memory tracking see gmt_support.c
> for extra info
> #set (CMAKE_C_FLAGS "-Wall -Wdeclaration-after-statement") # recommended
> even for release build
> #set (CMAKE_C_FLAGS "-Wextra ${CMAKE_C_FLAGS}")            # extra warnings
> #set (CMAKE_C_FLAGS_DEBUG -ggdb3)                          # gdb debugging
> symbols
> #set (CMAKE_C_FLAGS_RELEASE "-ggdb3 -O2 -Wuninitialized")  # check
> uninitialized variables
> #set (CMAKE_LINK_DEPENDS_DEBUG_MODE TRUE)                  # debug link
> dependencies
>
> #
> # System specific tweaks
> #
>
> # This is for GCC on Solaris to avoid "relocations remain against
> allocatable
> # but non-writable sections" problems:
> #set (USER_GMTLIB_LINK_FLAGS -mimpure-text)
>
> # This may be needed to enable strdup and extended math functions with GCC
> and
> # Suncc on Solaris:
> #set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -D__EXTENSIONS__")
>
> # Do not warn when building with Windows SDK or Visual Studio Express:
> #set (CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS ON)
>
> # Manually select runtime library when compiling with Windows SDK or Visual
> # Studio Express:
> #set (CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS c:/Windows/System32/msvcr100.dll)
>
> # If your NetCDF library is static (not recommended, applies to Windows
> only)
> #set (NETCDF_STATIC TRUE)
>
> # If want to rename the DLLs to something else than the default (e.g. to
> # append the bitness - Windows only)
> #if (WIN32)
> # set (BITAGE 32)
> # # Detect if we are building a 32 or 64 bits version
> # if (CMAKE_SIZEOF_VOID_P EQUAL 8)
> #   set (BITAGE 64)
> # endif ()
> # set (GMT_DLL_RENAME gmt_w${BITAGE})
> # set (PSL_DLL_RENAME psl_w${BITAGE})
> #endif(WIN32)
>
> # On Windows Visual C 2012 needs _ALLOW_KEYWORD_MACROS to build
> #if(MSVC11)
> #  add_definitions(/D_ALLOW_KEYWORD_MACROS)
> #endif(MSVC11)
>
> # vim: textwidth=78 noexpandtab tabstop=2 softtabstop=2 shiftwidth=2
>
> -Peter
>
>
> On Fri, Jan 31, 2014 at 8:10 PM, Joaquim Luis <[email protected]> wrote:
>
>> No.
>>
>> GMT5 use cmake not autotools as the building system so this won't work.
>>
>>
>>  then you commonly enter the created tree of directories searching for
>>> a makefike. In this directory, you run:
>>>
>>> ./configure
>>> ./make install
>>>
>>> normally you have also an INSTALL and README files in the same directory.
>>>
>>> Finally you create some links and that's all. I don't now if this is
>>> your case, but is the common way to do those thinks
>>>
>>> 2014/1/31, p Valdés<[email protected]>:
>>>
>>>> tar.gz file is an archive (a box with many archives) + compressed (gzip)
>>>> file
>>>>
>>>> you need first to uncompress the file with: gunzip myfile.tar.gz
>>>>
>>>> then you need to move to your choice directory and open the package
>>>> (now named myfile.tar) with
>>>>
>>>> tar -xvvf myfile.tar
>>>>
>>>> 2014/1/31, Peter<[email protected]>:
>>>>
>>>>> I have downloaded all the files shown in this page
>>>>>
>>>>> http://gmt.soest.hawaii.edu/projects/gmt/wiki/BuildingGMT
>>>>> http://gmt.soest.hawaii.edu/projects/gmt/wiki/PackagingGMT
>>>>>
>>>>>
>>>>> Really didn't understand please someone help
>>>>>
>>>>> How to install ? I don't want mixup with system library I want to
>>>>> install
>>>>> here
>>>>>
>>>>> /home/peter/software/gmt/gmt5
>>>>>
>>>>> I have these files in home directory
>>>>>
>>>>> gmt-5.1.0-src.tar.gz
>>>>> gshhg-gmt-nc4-2.2.4.tar.gz
>>>>> dcw-gmt-1.1.0.tar.gz
>>>>>
>>>>> netcdf_home=/home/peter/software/netcdf/netcdf_4_3
>>>>> hdf_home=/home/peter/software/hdf/hdf5
>>>>> cmake_home=/home/peter/software/cmake/bin
>>>>>
>>>>>
>>>>>
>>>>> Please someone kindly help me, I am not interested to use yum as it
>>>>> installs old version
>>>>>
>>>>>
>>>>> - Peter
>>>>>
>>>>> To unsubscribe, send the message "signoff gmt-help" to
>>>>> [email protected]
>>>>>
>>>>>  To unsubscribe, send the message "signoff gmt-help" to
>>> [email protected]
>>>
>>>
>>>
>> To unsubscribe, send the message "signoff gmt-help" to
>> [email protected]
>>
>
> To unsubscribe, send the message "signoff gmt-help" to
> [email protected]
>

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