BioJava for SNP analysis?
Rick Byers <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi, I'm writing some Java code for analyzing SNP microarray data. I'd like to move to an open-source framework so I can leverage a community. To what extent is BioJava appropriate for SNP analysis? I don't see any code, documentation or samples that use microarray data (although I do see it listed as a potential 'other' module for BioJava 3). Is it reasonable to just use a Sequence for all the data points and define features for each SNP? Or is there really nothing I'd want to re-use from BioJava beyond the basic DNA alphabet? If BioJava isn't a great framework to use for SNP microarray analysis, does anyone know of an open-source project (preferably Java) that is? Thanks! Rick _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l