Re: reading Nexus files
Andy Yates <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi, I believe the forester is the best library for this job & can be retrieved from BioJava's Maven repository http://www.biojava.org/download/maven/ I'm not 100% sure but I think if you do not go for the BioJava version you'll have to compile your own. Forester is also used in biojava3-phylo; Scooter Willis is probably the best person to talk to about this Regards, Andy On 1 Nov 2010, at 16:20, filip wrote: > Hi, > I would like to write a class with methods for parsing tip labels, > edges (parent-sibling) and edge lengths from nexus tree file (single > tree block). Could You point me to some biojava classes I could use? > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Andrew Yates Ensembl Genomes Engineer EMBL-EBI Tel: +44-(0)1223-492538 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l