Re: reading Nexus files
Tiago Antão <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi, Biojava does have org.biojavax.bio.phylo.io.nexus. Sometime ago I refactored that code and made an example with it: http://tiago.org/cc/2009/11/17/reading-newicknexus-phylogenetic-trees-with-biojava/ I don't know if this suites you needs. If you find a bug with the code, just drop an email here on the list and I will take care of it (time permitting). On Mon, Nov 1, 2010 at 4:20 PM, filip <[email protected]> wrote: > Hi, > I would like to write a class with methods for parsing tip labels, > edges (parent-sibling) and edge lengths from nexus tree file (single > tree block). Could You point me to some biojava classes I could use? > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- "If you want to get laid, go to college. If you want an education, go to the library." - Frank Zappa _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l