Re: NullPointerException when using Alignments.getMultipleSequenceAlignment
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepyBzyVUFG0+gDgrgGAXBoY7jM=F4T_1D7xZbSscaXRd2g@mail.gmail.com> |
Can you provide the fasta file? otherwise this is difficult to reproduce... Andreas On Wed, Oct 5, 2011 at 12:22 PM, Hannes Brandstätter-Müller <[email protected]> wrote: > 2011/10/5 Spencer Bliven <[email protected]>: >> In the current SVN code (and therefor probably Biojava 3.0.2), >> CookbookMSA.java includes that import statement but is otherwise identical >> to the wiki version. It runs just fine for me. Probably updating to Biojava >> 3.0.2 will fix the null pointer exception. > > I installed it via Maven just last week - so I guess it should be on > 3.0.2 - I'll check tomorrow. > > Anyhow, the problem isn't the wiki (I already updated that, btw) but > the fact that it seems to work with Protein Sequences, but when I use > my DNA sequences, it breaks. > If you go to my first post, I copied my code there (just add a wrapper > main that supplies a valid fasta file as parameter) > > Hannes > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l