Re: NullPointerException when using Alignments.getMultipleSequenceAlignment
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2m=gHua1ZThqSFE+_zcP-KoCtT1dZ2hsD3sDZQgG6Bvynw@mail.gmail.com> |
2011/10/5 Spencer Bliven <[email protected]>: > In the current SVN code (and therefor probably Biojava 3.0.2), > CookbookMSA.java includes that import statement but is otherwise identical > to the wiki version. It runs just fine for me. Probably updating to Biojava > 3.0.2 will fix the null pointer exception. I installed it via Maven just last week - so I guess it should be on 3.0.2 - I'll check tomorrow. Anyhow, the problem isn't the wiki (I already updated that, btw) but the fact that it seems to work with Protein Sequences, but when I use my DNA sequences, it breaks. If you go to my first post, I copied my code there (just add a wrapper main that supplies a valid fasta file as parameter) Hannes _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l