DNA: Many to one alignments
Jeremy Lewi <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CACijwiYaZDRbH5APj=7Zt4ZqA3jNdPssE68x6cBdJnA7469EXQ@mail.gmail.com> |
HI biojava users, I'd like to align N DNA sequences to my reference sequence. I don't know which strand of my N query sequences will be the best match for my query sequence. Right, now I do this by doing 2N pairwise alignments where I separately align each query and its reverse complement to the reference. Is there an easier, more efficient way to do this and build the alignment profile for my N sequences to the reference? Thanks J _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l