Re: Partial ORGANISM_SCIENTIFIC name returned from PDB 4xcw

Hi Guoying

Thanks for reporting the problem. I've added the issue to github and 
fixed it:

https://github.com/biojava/biojava/issues/289

The next release of biojava should then contain the fix.

Note that you can also directly open issues in github to report specific 
problems like this one.

Cheers

Jose


On 25.06.2015 15:38, Guoying Qi wrote:
> For PDB 4xcw, only partial organism scientific name returned by the 
> following method:
>
> getOrganismScientific()
> org.biojava.nbio.structure.Compound
>
> HELICOBACTER PYLORI (STRAIN J99 / ATCC 7
>
> I traced back to PDBFileParser,  it seems this PDB file being treated 
> in legacy format and the line length being trimmed into 72.
>
> Can this problem be fixed somehow?
>
> Thanks.
>
> Guoying Qi
>
>
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