Re: BioSQL support in Biojava
Hilmar Lapp <[email protected]> Sun, 30 Oct 2016 18:04:19 -0400
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
--===============4886154425626388409== Content-Type: multipart/alternative; boundary="Apple-Mail=_694DF4A4-4BBF-496A-AE54-8B92095B36BB" --Apple-Mail=_694DF4A4-4BBF-496A-AE54-8B92095B36BB Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=utf-8 Ah sorry, I had meant to include that link, not sure how I forgot that: http://biosql.org/wiki/BioJava_BioSQL_ORM -hilmar > On Oct 30, 2016, at 5:57 PM, Michael Heuer <[email protected]> wrote: >=20 > Hello Hilmar, >=20 > biojava-legacy (1.x releases) is still maintained here >=20 > https://github.com/biojava/biojava-legacy > <https://github.com/biojava/biojava-legacy> > although to be fair the last release (1.9.2) was on 13 Mar 2015. >=20 > If you point me to the right place, I should be able to update the = BioSQL doc links. >=20 > michael >=20 >=20 > On Sun, Oct 30, 2016 at 3:24 PM, Hilmar Lapp <[email protected] = <mailto:[email protected]>> wrote: > My understanding is that BioSQL support in Biojava is only available = in the legacy code, 1.x, which is no longer maintained, and is not = currently supported in the current Biojava version, 3.x. >=20 > Could someone verify the correctness of that in principle? >=20 > Even better, would someone be willing to update the BioSQL = documentation on the website accordingly as it pertains to Biojava? The = links here all still go into subversion repos, but I=E2=80=99m having = trouble identifying where they should go instead. If someone were = willing to update them, and to include a statement as to the current = status of support in Biojava, that would be much appreciated. >=20 > -hilmar > --=20 > Hilmar Lapp -:- lappland.io <http://lappland.io/> >=20 >=20 >=20 >=20 > _______________________________________________ > Biojava-l mailing list - [email protected] = <mailto:[email protected]> > http://mailman.open-bio.org/mailman/listinfo/biojava-l = <http://mailman.open-bio.org/mailman/listinfo/biojava-l> >=20 --=20 Hilmar Lapp -:- lappland.io --Apple-Mail=_694DF4A4-4BBF-496A-AE54-8B92095B36BB Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=utf-8 <html><head><meta http-equiv=3D"Content-Type" content=3D"text/html = charset=3Dutf-8"></head><body style=3D"word-wrap: break-word; = -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" = class=3D"">Ah sorry, I had meant to include that link, not sure how I = forgot that:<div class=3D""><a = href=3D"http://biosql.org/wiki/BioJava_BioSQL_ORM" = class=3D"">http://biosql.org/wiki/BioJava_BioSQL_ORM</a></div><div = class=3D""><br class=3D""></div><div class=3D""> -hilmar</div><div = class=3D""><br class=3D""><div><blockquote type=3D"cite" class=3D""><div = class=3D"">On Oct 30, 2016, at 5:57 PM, Michael Heuer <<a = href=3D"mailto:[email protected]" class=3D"">[email protected]</a>> = wrote:</div><br class=3D"Apple-interchange-newline"><div class=3D""><div = dir=3D"ltr" class=3D""><div class=3D""><div class=3D""><div = class=3D"">Hello Hilmar,<br class=3D""><br class=3D""></div>biojava-legacy= (1.x releases) is still maintained here<br class=3D""><br class=3D""><a = href=3D"https://github.com/biojava/biojava-legacy" = class=3D"">https://github.com/biojava/biojava-legacy<br class=3D""></a><br= class=3D""></div>although to be fair the last release (1.9.2) was on 13 = Mar 2015.<br class=3D""><br class=3D"">If you point me to the right = place, I should be able to update the BioSQL doc links.<br class=3D""><br = class=3D""></div><div class=3D""> michael<br = class=3D""></div><div class=3D""><div class=3D""><br = class=3D""></div></div></div><div class=3D"gmail_extra"><br = class=3D""><div class=3D"gmail_quote">On Sun, Oct 30, 2016 at 3:24 PM, = Hilmar Lapp <span dir=3D"ltr" class=3D""><<a = href=3D"mailto:[email protected]" target=3D"_blank" = class=3D"">[email protected]</a>></span> wrote:<br = class=3D""><blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 = .8ex;border-left:1px #ccc solid;padding-left:1ex"><div = style=3D"word-wrap:break-word" class=3D"">My understanding is that = BioSQL support in Biojava is only available in the legacy code, 1.x, = which is no longer maintained, and is not currently supported in the = current Biojava version, 3.x.<div class=3D""><br class=3D""></div><div = class=3D"">Could someone verify the correctness of that in = principle?</div><div class=3D""><br class=3D""></div><div class=3D"">Even = better, would someone be willing to update the BioSQL documentation on = the website accordingly as it pertains to Biojava? The links here all = still go into subversion repos, but I=E2=80=99m having trouble = identifying where they should go instead. If someone were willing to = update them, and to include a statement as to the current status of = support in Biojava, that would be much appreciated.</div><span = class=3D"HOEnZb"><font color=3D"#888888" class=3D""><div class=3D""><br = class=3D""></div><div class=3D""> -hilmar<br class=3D""><div = class=3D""> <div class=3D""><div style=3D"font-family:Monaco;font-size:11px" = class=3D"">-- </div><div style=3D"font-family:Monaco;font-size:11px" = class=3D"">Hilmar Lapp -:- <a href=3D"http://lappland.io/" = target=3D"_blank" class=3D"">lappland.io</a></div></div><div = class=3D""><br class=3D""></div><br = class=3D"m_-8367162827936738991Apple-interchange-newline"> </div> <br class=3D""></div></font></span></div><br = class=3D"">______________________________<wbr = class=3D"">_________________<br class=3D""> Biojava-l mailing list - <a = href=3D"mailto:[email protected]" = class=3D"">[email protected]</a><br class=3D""> <a href=3D"http://mailman.open-bio.org/mailman/listinfo/biojava-l" = rel=3D"noreferrer" target=3D"_blank" = class=3D"">http://mailman.open-bio.org/<wbr = class=3D"">mailman/listinfo/biojava-l</a><br = class=3D""></blockquote></div><br class=3D""></div> </div></blockquote></div><br class=3D""><div class=3D""> <div class=3D""><div style=3D"font-family: Monaco; font-size: 11px; = orphans: 2; widows: 2;" class=3D"">-- </div><div = style=3D"font-family: Monaco; font-size: 11px; orphans: 2; widows: 2;" = class=3D"">Hilmar Lapp -:- <a href=3D"http://lappland.io" = class=3D"">lappland.io</a></div></div><div class=3D""><br = class=3D""></div><br class=3D"Apple-interchange-newline"> </div> <br class=3D""></div></body></html>= --Apple-Mail=_694DF4A4-4BBF-496A-AE54-8B92095B36BB-- --===============4886154425626388409== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biojava-l mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biojava-l --===============4886154425626388409==--