frac_identical | Bio::Search::Tiling::MapTiling

Thiago Venancio <[email protected]>
Newsgroups gmane.comp.lang.perl.bio.general
Message-ID <[email protected]>
Hi all,

Bio::Search::Tiling::MapTiling frac_identical() is calculating it over the 
total query length instead of the aligned length in a a BLASTN. Below is 
the code I am using:

while( my $hit = $result->next_hit ) {
     my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
     my $id = $tiling->frac_identical(-type => 'query', -action => 'exact');
}

Does anyone know how to change this behavior ?

Best,
Thiago

_______________________________________________
Bioperl-l mailing list
[email protected]
http://mailman.open-bio.org/mailman/listinfo/bioperl-l
lmpx.com only provides a reader for public news (NNTP) servers. It is not affiliated with the servers or forums shown here and is not responsible for the content of articles, which is written by their respective authors.