frac_identical | Bio::Search::Tiling::MapTiling
Thiago Venancio <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi all,
Bio::Search::Tiling::MapTiling frac_identical() is calculating it over the
total query length instead of the aligned length in a a BLASTN. Below is
the code I am using:
while( my $hit = $result->next_hit ) {
my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
my $id = $tiling->frac_identical(-type => 'query', -action => 'exact');
}
Does anyone know how to change this behavior ?
Best,
Thiago
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