Re: frac_identical | Bio::Search::Tiling::MapTiling
Thiago Venancio <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Solved.
Thanks.
On Friday, February 27, 2015 at 4:26:23 PM UTC-3, Thiago Venancio wrote:
>
> Hi all,
>
> Bio::Search::Tiling::MapTiling frac_identical() is calculating it over the
> total query length instead of the aligned length in a a BLASTN. Below is
> the code I am using:
>
> while( my $hit = $result->next_hit ) {
> my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
> my $id = $tiling->frac_identical(-type => 'query', -action =>
> 'exact');
> }
>
> Does anyone know how to change this behavior ?
>
> Best,
> Thiago
>
>
>
>
>
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