Re: Using Utilities to retrieve multiple coding sequences for identical (WP_) protein sequences
Peter Cock <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <CAKVJ-_5C6b-JXbhuy6-96eGn_U4OjFB7yyGEyuMO7F8dNgex_A@mail.gmail.com> |
Good point. Ivan Erill asked about this on the Biopython list late last year - presumably the same solution would apply there too?: http://lists.open-bio.org/pipermail/biopython/2014-October/015438.html See also: ftp://ftp.ncbi.nlm.nih.gov/refseq/release/announcements/WP-proteins-06.10.2013.pdf Peter On Mon, Apr 27, 2015 at 6:35 PM, Warren Gallin <[email protected]> wrote: > With the advent of the WP_ accession series in RefSeq there is no longer a direct link between a single protein sequence and its encoding nucleotide sequence. > > It is possible to find the multiple individual nucleotide records encoding the identical protein sequences on the Web interface through the “Identical Proteins” link, which generates a list of all of the coding sequences for the identical protein sequence. > > Is there any way to work through these linkages using Bio::DB::Utilities? > > Thanks, > > Warren Gallin > _______________________________________________ > Bioperl-l mailing list > [email protected] > http://mailman.open-bio.org/mailman/listinfo/bioperl-l _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l