WP_ Accession Protein records
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
I've been working on scripts that update a small database that I maintain from a selection or records in GENBANK. I've encountered a problem and am wondering if anyone can suggest a work-around. I am finding that the protein records that have been replaced by reference to a single entry in the WP_ series accessions in RefSeq have been annotated as removed, rather than replaced. The result is that when I use a gi number from one of the original (pre-consolidation) entries to recover a record using Bio::DB::Eutilities tools to return a Document Summary I get a record that has the status listed as dead, rather than Replaced by WP_XXXXX. In the on-line web interface, however, the search has a redirection to the appropriate WP_XXXXX record. An example is gi number 71065499. So my question is, is there a Feature other than status in the Document Summary record that gives forwarding information for records replaced by WP_XXXX series records? Warren Gallin _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l