Re: Using Utilities to retrieve multiple coding sequences for identical (WP_) protein sequences
"Fields, Christopher J" <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
According to that post, Ivan wasn’t able to access the data via elink (see question at bottom); any idea whether he received an answer? I’ll have to look at whether this is possible via Bio::DB::EUtilities. chris > On Apr 27, 2015, at 3:52 PM, Peter Cock <[email protected]> wrote: > > Good point. Ivan Erill asked about this on the Biopython list late > last year - presumably the same solution would apply there too?: > > http://lists.open-bio.org/pipermail/biopython/2014-October/015438.html > > See also: > ftp://ftp.ncbi.nlm.nih.gov/refseq/release/announcements/WP-proteins-06.10.2013.pdf > > Peter > > On Mon, Apr 27, 2015 at 6:35 PM, Warren Gallin <[email protected]> wrote: >> With the advent of the WP_ accession series in RefSeq there is no longer a direct link between a single protein sequence and its encoding nucleotide sequence. >> >> It is possible to find the multiple individual nucleotide records encoding the identical protein sequences on the Web interface through the “Identical Proteins” link, which generates a list of all of the coding sequences for the identical protein sequence. >> >> Is there any way to work through these linkages using Bio::DB::Utilities? >> >> Thanks, >> >> Warren Gallin >> _______________________________________________ >> Bioperl-l mailing list >> [email protected] >> http://mailman.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ > Bioperl-l mailing list > [email protected] > http://mailman.open-bio.org/mailman/listinfo/bioperl-l _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l