Can't find Bio::ext::Align on CPAN
Warren Gallin <[email protected]> Thu, 11 Mar 2021 15:43:13 -0700
| Newsgroups | gmane.comp.lang.perl.bio.general |
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| Message-ID | <[email protected]> |
--===============5885947874399266611== Content-Type: multipart/signed; boundary="Apple-Mail=_DB2472E6-E6CE-4231-8CE1-4BF5C8786DE5"; protocol="application/pkcs7-signature"; micalg=sha-256 --Apple-Mail=_DB2472E6-E6CE-4231-8CE1-4BF5C8786DE5 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=us-ascii I am trying to use the Bio::Tools::dpAlign module, but the run fails = with a message:\ The C-compiled engine for Smith Waterman alignments (Bio::Ext::Align) = has not been installed. Please install the bioperl-ext package I can not find this package. Am I dealing with a no-longer-functional module, or am I missing a = pathway to a resource? All advice appreciated. Warren Gallin= --Apple-Mail=_DB2472E6-E6CE-4231-8CE1-4BF5C8786DE5 Content-Disposition: attachment; filename=smime.p7s Content-Type: application/pkcs7-signature; name=smime.p7s Content-Transfer-Encoding: base64 MIAGCSqGSIb3DQEHAqCAMIACAQExDzANBglghkgBZQMEAgEFADCABgkqhkiG9w0BBwEAAKCCA9Yw ggPSMIICuqADAgECAgqbogZQe9qEhvmzMA0GCSqGSIb3DQEBCwUAMIGWMRYwFAYDVQQDEw1XYXJy ZW4gR2FsbGluMR8wHQYDVQQKExZVbml2ZXJzaXR5IG9mIEFsYmVydHlhMSowKAYDVQQLEyFEZXBh cnRtZW50IG9mIEJpb2xvZ2ljYWwgU2NpZW5jZXMxIjAgBgkqhkiG9w0BCQEWE3dnYWxsaW5AdWFs YmVydGEuY2ExCzAJBgNVBAYTAkNBMB4XDTE2MTExMTIwMDIwNVoXDTIxMTExMTIwMDIwNVowgZYx FjAUBgNVBAMTDVdhcnJlbiBHYWxsaW4xHzAdBgNVBAoTFlVuaXZlcnNpdHkgb2YgQWxiZXJ0eWEx KjAoBgNVBAsTIURlcGFydG1lbnQgb2YgQmlvbG9naWNhbCBTY2llbmNlczEiMCAGCSqGSIb3DQEJ ARYTd2dhbGxpbkB1YWxiZXJ0YS5jYTELMAkGA1UEBhMCQ0EwggEiMA0GCSqGSIb3DQEBAQUAA4IB DwAwggEKAoIBAQCdxEYCMyAm1PhGnD/oN+zzkFDidSkyFLvK8Gl79ZARdtS4iauQX4MF27ZlQih8 cpThRyJrc6W/2xxj5/EPWfz5QX4QyTj/lfdMZXhPMvnw+jBPAWo2qWcMuVZcMmgSw3NtfXXqCRbI kKAHRNfruu8nOk8Bfm42BPyjxFOuaIpgfw7MzHlZ0lvHofk7LYzJfSSH9gz+29meyIA4XzxMD9zU /l/Sl+9FC+9mxbVy+gdwyMbbKMCzSm8xKyT3OXtChLoTh1Wc6gzKbKS2U7sKnfRhBIHJWE/2l93M Xh/kk6FSOp1obwXwqaLqB9kmgcoYxAhn1CQkqtzuL2v7qjwU5dgrAgMBAAGjIDAeMA8GCSqGSIb3 LwEBCgQCBQAwCwYDVR0PBAQDAgeAMA0GCSqGSIb3DQEBCwUAA4IBAQBc7PbnQmoc9HECRgpU+xNT dRKbN57PQ7vxvwZPdyG4WaLbrh4H+DwgIV1axb8rAg5NovdQ8C0ORlymXCddvVkSIAOwTBY2jq1P oa8JvrzdlPej6jb4TdQXHCIkvYMgfM+MXj2o/fxeHeR0akEr+7e//mkMnnj8DYWJByyMghU9Ufnm ZZGYEapI1oq6q76Llv4DeddXMfFBxf1wEL75ii1ey08D4EVKdy0L3B6HGS6P8J0iIG6UlsYqJdz7 UItUWvn0XbYevX/dEM/sFh0VBF75033ShNKuUR+OWbLt9uPXQZrpo+L0FwJWBsGcIAVnusH2TfQ/ zmulQEIgES41tylYMYICPDCCAjgCAQEwgaUwgZYxFjAUBgNVBAMTDVdhcnJlbiBHYWxsaW4xHzAd BgNVBAoTFlVuaXZlcnNpdHkgb2YgQWxiZXJ0eWExKjAoBgNVBAsTIURlcGFydG1lbnQgb2YgQmlv bG9naWNhbCBTY2llbmNlczEiMCAGCSqGSIb3DQEJARYTd2dhbGxpbkB1YWxiZXJ0YS5jYTELMAkG A1UEBhMCQ0ECCpuiBlB72oSG+bMwDQYJYIZIAWUDBAIBBQCgaTAYBgkqhkiG9w0BCQMxCwYJKoZI hvcNAQcBMBwGCSqGSIb3DQEJBTEPFw0yMTAzMTEyMjQzMTNaMC8GCSqGSIb3DQEJBDEiBCAjZajm SiZwHO/U36noO9cCMJDtmC02DfPptH50AyMx0TANBgkqhkiG9w0BAQsFAASCAQBEydw44QeXlKru 9cfFuw1cxVmkTBDN+tPs7VoeDfC2OrAxiJBzLVe1dALgxYoXhY9yyR2bb7LQ4sBf8SxI9kQ10pSo 9OKXNfnrQm4QrkVlCtTzCgTM+WmxBfF979umdy5Bv+d14qXkZo4HC4KsKrnVP+IhffLqjxhDFtvV DZg4b+d9I1OOjGOxeGzoM5U6JvZyeDx471nKVdbNrHADLVMeioXB5Y37wum4R3US3DbPFi/IAkkq c0VzRnXRlTHGqXEkOvsijnQPZXRn4H2eErddj9011zZC0PjVYAIUKH3CG7FtAYiOYvMNjvUHKuop T/mkNUDkbG6sGmBTld9e0OGhAAAAAAAA --Apple-Mail=_DB2472E6-E6CE-4231-8CE1-4BF5C8786DE5-- --===============5885947874399266611== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Bioperl-l mailing list [email protected] https://mailman.open-bio.org/mailman/listinfo/bioperl-l --===============5885947874399266611==--