Issue #3384 has been updated by Peter Cock.
Status changed from New to Closed
% Done changed from 0 to 100
"pip install biopython" seems to be working nowadays, belatedly closing this issue.
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Bug #3384: Installation fails with pip-3.2
https://redmine.open-bio.org/issues/3384#change-15299
* Author: Roy Crihfield
* Status: Closed
* Priority: Normal
* Assignee: Biopython Dev Mailing List
* Category: Main Distribution
* Target version:
* URL:
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Linux 3.5.3-1-ARCH x86_64 GNU/Linux
Python 3.2.3
Bio.__version__ == '1.60'
Installation fails with with pip 1.2:
$ sudo pip-3.2 install biopython
:
:
Converting build/py3.2/Doc/examples/fasta_dictionary.py
Converting build/py3.2/Doc/examples/nmr/simplepredict.py
Python 2to3 processing done.
running egg_info
error: error in 'egg_base' option: 'pip-egg-info' does not exist or is not a directory
----------------------------------------
Command python setup.py egg_info failed with error code 1 in /tmp/pip-build/biopython
Exception information:
Traceback (most recent call last):
File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/basecommand.py", line 106, in main
status = self.run(options, args)
File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/commands/install.py", line 256, in run
requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)
File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/req.py", line 1042, in prepare_files
req_to_install.run_egg_info()
File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/req.py", line 236, in run_egg_info
command_desc='python setup.py egg_info')
File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/util.py", line 612, in call_subprocess
% (command_desc, proc.returncode, cwd))
pip.exceptions.InstallationError: Command python setup.py egg_info failed with error code 1 in /tmp/pip-build/biopython
---Files--------------------------------
pip.log (85.9 KB)
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