Re: Deprecating Bio.PDB.Dice

Peter Cock <[email protected]> Tue, 18 Apr 2017 13:36:39 +0100
Newsgroups gmane.comp.python.bio.devel
Message-ID <CAKVJ-_7i9XgifaxU3JatBY0NUuA1QUm9MqAUgDHf7rO_iVEwgw@mail.gmail.com>
Pull request to do this is here:

https://github.com/biopython/biopython/pull/1166

Issue to reuse the code is here:

https://github.com/biopython/biopython/issues/1167

On Tue, Apr 18, 2017 at 1:29 PM, Peter Cock <[email protected]> wrote:
> Hello all,
>
> This came up in discussion on GitHub issue #820 [*] about turning
> existing self-tests into proper unit tests for user under TravisCI etc.
>
> Bio/PDB/Dice.py is essentially an example of how to write your
> own selector for use with PDBIO to write a subset of a PDB file.
>
> We are proposing to formally deprecate Bio.PDB.Dice (and later
> remove it [**]), and ideally reuse this as an example script and/or
> test case.
>
> If anyone is using the Dice module, please let us know.
>
> Thank you,
>
> Peter
>
> [*] https://github.com/biopython/biopython/issues/820
> [**] http://biopython.org/wiki/Deprecation_policy