Re: [Biopython] Fw: Developing a wrapper for EBI dbfetch
Peter Cock <[email protected]> Wed, 21 Jun 2017 12:06:48 +0100
| Newsgroups | gmane.comp.python.bio.devel,gmane.comp.python.bio.general |
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| Message-ID | <CAKVJ-_7O--nRjnc-p3f2Mbm-W1Nn4y=NkYFHk2YZH_PzM-U=Kw@mail.gmail.com> |
CC biopython-dev for the module naming in particular. General feedback or ideas about supporting the EBI's web-interface (their REST API, similar to the NCBI's Entrez utilities, or TogoWS) are welcome here or on the GitHub issue: https://github.com/biopython/biopython/issues/443 Peter On Wed, Jun 21, 2017 at 11:25 AM, Francesco Gastaldello (Staff) <[email protected]> wrote: > > Hi all, > > this mail regard the development on my behalf for the dbfetch wrapper. More info on the service are here: http://www.ebi.ac.uk/Tools/dbfetch/dbfetch > > There is already an issue on the Biopython GitHub (#443) were me and Peter Cock are discussing how to place the module when it's going to be ready. > > He mentioned the possibility to place it in Bio/EBI/__init__.py, but he's concened that this won't comply with PEP8 guidelines. > > Any thoughts about it? > > Regards, > > Francesco > > Dbfetch < EMBL-EBI > www.ebi.ac.uk > Dbfetch Help. What is dbfetch? Dbfetch is an abbreviation for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EMBL ...